BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942980
Length=1027
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11290.1 | Symbols: | Peroxidase superfamily protein | chr4... 1528 0.0
> AT4G11290.1 | Symbols: | Peroxidase superfamily protein | chr4:6869953-6871661
FORWARD LENGTH=1206
Length=1206
Score = 1528 bits (827), Expect = 0.0
Identities = 961/1027 (94%), Gaps = 4/1027 (0%)
Strand=Plus/Plus
Query 1 TTTTCTAAGTGTCTCGTATAAAAATGGCGAAATTCGGGTTGGCTCTTGTGATGATGATTC 60
||||||||||||||| || ||||||| ||| |||||| || |||||| | |||||||||
Sbjct 19 TTTTCTAAGTGTCTCATA-AAAAATGACGAGATTCGGATTAGCTCTT-T--TGATGATTC 74
Query 61 TTGTGATTCAAGGGTTTGTGAGCTTTTCAGAAGCACAATTGAAGATGGGATTCTACGACC 120
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 75 TTGTGATTCAAGGGCTTGTGACCTTTTCAGAAGCACAATTGAAGATGGGATTCTACGACC 134
Query 121 AAACTTGCCCTTACGCAGAGAAGATTGTACAAGATGTTGTCAACCAACATATCCACAATG 180
|||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 135 AAACGTGCCCTTACGCAGAGAAGATCGTACAAGATGTTGTCAACCAACATATAAACAATG 194
Query 181 CACCCTCTTTGGCTGCTGGGCTTATTAGGATGCATTTTCATGATTGCTTCGTGCGGGGTT 240
||||||||||||||||||| || |||||||||||||||||||| |||||||| |||||||
Sbjct 195 CACCCTCTTTGGCTGCTGGCCTAATTAGGATGCATTTTCATGACTGCTTCGTTCGGGGTT 254
Query 241 GCGATGGTTCGATCTTGATCAACGCGACATCGAGCAACCAACAAGTCGAGAAGCTTGCTC 300
| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 255 GTGATGGTTCCATCTTGATCAACGCGACATCGAGCAACCAACAAGTGGAGAAGCTTGCTC 314
Query 301 CTCCGAATCTAACTGTTAGAGGTTTCGATTTCATCGATAAAGTAAAGTCTGCTCTAGAAT 360
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 315 CTCCGAATCTAACTGTGAGAGGTTTCGATTTTATCGATAAAGTAAAGTCTGCTCTAGAAT 374
Query 361 CAAAGTGTCCTGGAATCGTCTCCTGCGCTGATATCATTACCCTCGCTACTAGAGACTCTA 420
||||||| |||||||||||||| |||||||||||||| || || ||||||||||||||||
Sbjct 375 CAAAGTGCCCTGGAATCGTCTCTTGCGCTGATATCATCACACTTGCTACTAGAGACTCTA 434
Query 421 TTGTTGCAATTGGTGGACCGACATGGAATGTTCCAACGGGACGCAGAGACGGACGTATCT 480
||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 435 TTGTTGCTATTGGTGGACCGACATGGAACGTTCCAACGGGGCGCAGAGACGGACGTATCT 494
Query 481 CTAACTTTGCCGAGGCTAGGAACAATATTCCACCTCCTTTCGGAAACTTCACGACTCTTA 540
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
Sbjct 495 CTAACTTTGCCGAGGCTATGAACAATATTCCTCCTCCTTTCGGAAACTTCACGACTCTGA 554
Query 541 TAACCCTCTTTGGAAACCAAGGACTTGATGTTAAAGACCTTGTCTTGTTATCCGGTGCGC 600
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 555 TAACCCTCTTTGGAAACCAAGGACTTGATGTTAAAGACCTCGTCTTGTTATCCGGTGCCC 614
Query 601 ACACTATTGGAGTGTCTCATTGCTCCTCCTTCTCAAACCGTCTCTTCAATTTTACCGGCG 660
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 615 ACACGATTGGAGTGTCTCATTGCTCCTCCTTCTCAAACCGTCTCTTCAATTTCACCGGCG 674
Query 661 TTGGAGACCAAGATCCGTCAATGGACAGCGAATATGTCGACAATCTCAAGTCACGGAGAT 720
|||||||||||||||| || | ||||||||||||| |||||||||||| ||||||||||
Sbjct 675 TTGGAGACCAAGATCCATCGCTCGACAGCGAATATGCCGACAATCTCAAATCACGGAGAT 734
Query 721 GTTTGGCTCTCGCCGACAATACCACAACGGTCGAAATGGATCCCGGTAGTCGAAACACCT 780
|||| || |||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 735 GTTTATCTATCGCTGACAATACCACAAAAGTCGAAATGGATCCCGGTAGTCGAAACACCT 794
Query 781 TCGATCTTAGCTACTACCGTCTGGTGCTGAAACGTCGTGGACTTTTCGAGTCTGACGCTG 840
|||||||||||||||||||||| || || ||||||||||||||||| |||||||||||||
Sbjct 795 TCGATCTTAGCTACTACCGTCTTGTCCTAAAACGTCGTGGACTTTTTGAGTCTGACGCTG 854
Query 841 CATTGACTATGAATCCCGCGGCATTGGCTCAGGTCAAACGCTTTTCCGGAGGATCGGAGC 900
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 855 CATTGACTATGAATCCTGCGGCATTGGCTCAGGTCAAACGCTTCGCCGGAGGATCGGAGC 914
Query 901 AAGAGTTCTTTGCTGAGTTCTCGAAGTCCATGGAGAAAATGGGAAGGATTGGGGTCAAAA 960
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 915 AAGAGTTCTTTGCTGAGTTCTCCAACTCCATGGAGAAAATGGGAAGGATTGGGGTCAAAA 974
Query 961 CCGGGTCGGATGGGGAGATCCGGAGAACATGTGCATTTGTTAATTAGAAGTGTTTCTAAC 1020
| ||||||||||||||||| || |||||||||||||||||||| || |||||||||| ||
Sbjct 975 CAGGGTCGGATGGGGAGATTCGAAGAACATGTGCATTTGTTAACTAAAAGTGTTTCTTAC 1034
Query 1021 TTTTTCT 1027
|||||||
Sbjct 1035 TTTTTCT 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50334615294
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5