BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942985
Length=1295
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11310.1 | Symbols: | Papain family cysteine protease | chr... 1805 0.0
AT4G11320.1 | Symbols: | Papain family cysteine protease | chr... 1509 0.0
> AT4G11310.1 | Symbols: | Papain family cysteine protease | chr4:6883551-6885517
FORWARD LENGTH=1337
Length=1337
Score = 1805 bits (977), Expect = 0.0
Identities = 1199/1302 (92%), Gaps = 32/1302 (2%)
Strand=Plus/Plus
Query 1 TTTAACACCCCA-AAAAACACATGGGTAGTGCAAAATCAGCCACGCTGATACTCTTAGTC 59
|||||| ||||| ||||| |||||||||||||||||||||||| |||||| ||||||||
Sbjct 23 TTTAACCCCCCACAAAAAAACATGGGTAGTGCAAAATCAGCCATGCTGATCCTCTTAGTA 82
Query 60 GCAATGGTCATCACATCTTGTGCCACGGCCATGGACATGTCCGTTGTGTCCTCCAACAAT 119
|||||||||||| |||| |||||||||||||| || ||||||| || || ||| ||
Sbjct 83 GCAATGGTCATCGCATCATGTGCCACGGCCATTGATATGTCCG-TG-GT-TTCCTAC--- 136
Query 120 AACCATCACTTGACCACCAGTCCTGGCCGTCTCCATAGCGGTTTCGATGCTGAGGCCTCG 179
|| || | | || | |||||||||||||| |||||||||||||||||||
Sbjct 137 GACGAT-A----A-CA--A-------CCGTCTCCATAGCGTTTTCGATGCTGAGGCCTCG 181
Query 180 CTGATCTTCGATTCATGGATGGTCAAACATGGGAAAGTGTACGGGTCCGTTGCCGAGAAG 239
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TTAATCTTCGAGTCATGGATGGTCAAACATGGGAAAGTGTACGGGTCCGTTGCCGAGAAG 241
Query 240 GAACGGCGTTTGACGATTTTCGAGGACAACCTTCGTTTTATCAATAATCGGAACGCTGAG 299
|||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 242 GAACGGCGTTTGACGATTTTTGAGGACAACCTCCGTTTTATCAATAACCGGAACGCTGAG 301
Query 300 AATCTCAGCTATCGGCTTGGTTTGACCCAGTTTGCGGATTTATCTCTTCATGAGTATGGA 359
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 302 AATCTCAGTTATCGGCTTGGTTTGACCGGGTTTGCGGATTTATCTCTTCATGAGTATAAA 361
Query 360 GAAGTTTGCCACGGGGCTGATCCAAGACCTCCTAGGAACCACATCTTTACGACTACCAGC 419
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||
Sbjct 362 GAAGTTTGCCACGGGGCTGATCCAAGACCTCCTAGGAACCACGTCTTTATGACTAGTAGC 421
Query 420 GACCGATACAAGACTAGTGCTGGTGATGTGCTTCCTAAGTCTGTTGATTGGAGAAACGAA 479
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 422 GACCGATACAAGACTAGTGCTGATGATGTGCTTCCTAAGTCAGTTGATTGGAGAAACGAA 481
Query 480 GGTGCAGTGACTGAAGTCAAAGATCAAGGCCATTGCAGGAGTTGTTGGGCATTCTCGACT 539
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 482 GGAGCAGTGACTGAAGTCAAAGATCAAGGCCATTGCAGGAGTTGTTGGGCTTTCTCGACT 541
Query 540 GTGGGAGCAGTGGAAGGCTTAAACAAGATCGTGACGGGAGAGTTAGTCACTTTGTCTGAG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 GTGGGAGCAGTGGAAGGCTTAAACAAGATCGTGACGGGAGAGTTAGTCACTTTGTCTGAG 601
Query 600 CAAGATTTGATTAATTGTAACAAAGAGAATAATGGTTGCGGAGGAGGCAAAGTCGAGACA 659
||||||||||| |||||||||||||| || ||||||||||||||||||||| |||||||
Sbjct 602 CAAGATTTGATCAATTGTAACAAAGAAAACAATGGTTGCGGAGGAGGCAAACTCGAGACT 661
Query 660 GCCTATGAGTTCATCATGAAGAATGGTGGTCTTGGTACCGACAACGATTATCCTTACAAA 719
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 662 GCCTATGAGTTCATCATGAAAAATGGTGGTCTTGGTACCGACAACGATTATCCTTACAAA 721
Query 720 GCTGTTAACGGAGTCTGTGATGGCCGCCTCAAGGAAAACAACAAGAATGTTATGATTGAT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 GCTGTTAACGGAGTCTGTGATGGCCGCCTCAAGGAAAACAACAAGAATGTTATGATTGAT 781
Query 780 GGGTTTGAGAATTTGCCTGCAAACGACGAAT-TAGCTCTAATGAAAGCCGTTGCTCACCA 838
|||| ||| |||||||| ||||||||||||| | ||||| |||||||| |||||||||||
Sbjct 782 GGGTATGAAAATTTGCCCGCAAACGACGAATCT-GCTCTCATGAAAGCGGTTGCTCACCA 840
Query 839 GCCTGTGACTGCCGTTATCGATTCCAGCAGCCGAGAGTTTCAGCTCTATGAATCGGGGGT 898
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 841 GCCTGTGACTGCCGTTATCGATTCCAGTAGCCGAGAGTTTCAGCTTTATGAATCGGGAGT 900
Query 899 GTTTGATGGCTCGTGCGGAACAAACCTAAACCATGGTGTTGTTGTGGTCGGGTATGGAAC 958
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 901 GTTTGATGGCTCGTGTGGAACAAACCTAAACCATGGAGTTGTTGTGGTCGGGTATGGAAC 960
Query 959 CGAGAACGGTCGTGACTACTGGCTCGTGAAAAACTCGAGGGGCAATACATGGGGAGAAGC 1018
||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 961 TGAGAATGGTCGTGACTACTGGCTCGTGAAAAACTCTAGGGGCATTACATGGGGAGAAGC 1020
Query 1019 TGGCTATATGAAGATGGCTCGCAATATTGCCAACCCAAGAGGTTTATGTGGCATTGCGAT 1078
|||||| |||||||||||||| || |||||||| |||||||| |||||||||||||| ||
Sbjct 1021 TGGCTACATGAAGATGGCTCGAAACATTGCCAATCCAAGAGGCTTATGTGGCATTGCAAT 1080
Query 1079 GCGAGCTTCATACCCTCTCAAGAACTCGTTTTCTACCGATAAAAGCTCCATCGCCTAATA 1138
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1081 GCGAGCTTCATACCCTCTAAAGAACTCCTTTTCTACCGATAAAAGCTCCATCGCCTAATA 1140
Query 1139 AAAGGAACTAAATGTATGTTATGCAAGGGATCAAGTGAGCGAACAACCTATTCGATTGTG 1198
||| || ||||||||||||||||||| ||||| ||||||| | |||||||||||||||||
Sbjct 1141 AAATGAGCTAAATGTATGTTATGCAAAGGATCCAGTGAGCCAGCAACCTATTCGATTGTG 1200
Query 1199 ---TGAAAAATAATGTAGTCGATGGGTTTTGTTTTGTAATATATTTTGTACT-GTATGG- 1253
||||||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 1201 AAATGAAAAATAATGTAGTCGATGGGTTTTGTTTTGTAATATATTTTGGATTTGTATGGA 1260
Query 1254 GGTTGTCAAAGTTTGGAGTTTGTATAATATTTATGGATATTT 1295
|| | ||| ||||| ||||||||||||||||||||||||||
Sbjct 1261 GG--G-CAATGTTTGAAGTTTGTATAATATTTATGGATATTT 1299
> AT4G11320.1 | Symbols: | Papain family cysteine protease | chr4:6887254-6889059
FORWARD LENGTH=1430
Length=1430
Score = 1509 bits (817), Expect = 0.0
Identities = 1140/1295 (88%), Gaps = 26/1295 (2%)
Strand=Plus/Plus
Query 9 CCCAAAAAACACATGGG-TAGTGCAAAATCAGCCACGCTGATAC-TCTTAGTCGCAATGG 66
||||| ||| | ||||| || ||| |||||||||| |||||| | ||||| | ||| |||
Sbjct 73 CCCAACAAA-A-ATGGGTTA-TGCTAAATCAGCCATGCTGAT-CTTCTTACTAGCATTGG 128
Query 67 TCATCACATCTTGTGCCACGGCCATGGACATGTCCGTTGTGTCCTCCAACAATAACCATC 126
||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
Sbjct 129 TCATCGCATCTTGTGCCACGGCCATGGACATGTCCGTTGTTTCCTCCAACGATAACCACC 188
Query 127 ACTTGACCACCAGTCCTGGCCGTC-TCCATAGCGGTTTCGATGCTGAGGCCTCGC-TGAT 184
|| ||||| || |||| ||||| | | || | |||||| ||||| ||| | | ||||
Sbjct 189 ACGTGACCGCCGGTCCCGGCCGCCGT-CAGGGTATTTTCGACGCTGAAGCCAC-CTTGAT 246
Query 185 CTTCGATTCATGGATGGTCAAACATGGGAAAGTGTACGGGTCCGTTGCCGAGAAGGAACG 244
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 247 GTTCGAGTCATGGATGGTCAAACATGGGAAAGTGTACGACTCCGTTGCCGAGAAGGAACG 306
Query 245 GCGTTTGACGATTTTCGAGGACAACCTTCGTTTTATCAATAATCGGAACGCTGAGAATCT 304
|||||| || ||||| ||||||||||| |||||||||| ||| |||||||||||||||||
Sbjct 307 GCGTTTAACTATTTTTGAGGACAACCTCCGTTTTATCACTAACCGGAACGCTGAGAATCT 366
Query 305 CAGCTATCGGCTTGGTTTGACCCAGTTTGCGGATTTATCTCTTCATGAGTATGGAGAAGT 364
||| || ||||||||||||| | |||||||||||||||||| ||||| || |||||| |
Sbjct 367 CAGTTACCGGCTTGGTTTGAATCGGTTTGCGGATTTATCTCTCCATGAATACGGAGAAAT 426
Query 365 TTGCCACGGGGCTGATCCAAGACCTCCTAGGAACCACATCTTTACGACTACCAGCGACCG 424
|||||| |||||||||||||||||||||||||||||| |||| | ||||| |||| ||||
Sbjct 427 TTGCCATGGGGCTGATCCAAGACCTCCTAGGAACCACGTCTTCATGACTAGCAGCAACCG 486
Query 425 ATACAAGACTAGTGCTGGTGATGTGCTTCCTAAGTCTGTTGATTGGAGAAACGAAGGTGC 484
|||||||||||||| ||||||||| ||||||||||| ||||| |||||||||||||| ||
Sbjct 487 ATACAAGACTAGTGATGGTGATGTTCTTCCTAAGTCCGTTGACTGGAGAAACGAAGGCGC 546
Query 485 AGTGACTGAAGTCAAAGATCAAGGCCATTGCAGGAGTTGTTGGGCATTCTCGACTGTGGG 544
|||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||
Sbjct 547 AGTGACTGAAGTCAAAGATCAAGGCCTTTGCAGGAGTTGTTGGGCTTTCTCCACTGTGGG 606
Query 545 AGCAGTGGAAGGCTTAAACAAGATCGTGACGGGAGAGTTAGTCACTTTGTCTGAGCAAGA 604
|||||||||||||||||||||||| ||||| |||||| |||| |||||||||||||||||
Sbjct 607 AGCAGTGGAAGGCTTAAACAAGATTGTGACTGGAGAGCTAGTAACTTTGTCTGAGCAAGA 666
Query 605 TTTGATTAATTGTAACAAAGAGAATAATGGTTGCGGAGGAGGCAAAGTCGAGACAGCCTA 664
|||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 667 TTTGATCAATTGTAACAAAGAAAACAATGGTTGCGGAGGAGGCAAAGTCGAGACAGCCTA 726
Query 665 TGAGTTCATCATGAAGAATGGTGGTCTTGGTACCGACAACGATTATCCTTACAAAGCTGT 724
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 727 TGAGTTCATCATGAACAATGGTGGTCTTGGTACCGACAACGATTATCCTTACAAAGCTCT 786
Query 725 TAACGGAGTCTGTGATGGCCGCCTCAAGGAAAACAACAAGAATGTTATGATTGATGGGTT 784
|| |||||||| || ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 787 CAATGGAGTCTGCGAAGGCCGCCTCAAGGAAGACAACAAGAATGTTATGATTGATGGGTA 846
Query 785 TGAGAATTTGCCTGCAAACGACGAATTAGCTCTAATGAAAGCCGTTGCTCACCAGCCTGT 844
||||||||||||||||||||| ||| ||||| |||||||| |||||||||||||||||
Sbjct 847 TGAGAATTTGCCTGCAAACGATGAAGCCGCTCTCATGAAAGCGGTTGCTCACCAGCCTGT 906
Query 845 GACTGCCGTTATCGATTCCAGCAGCCGAGAGTTTCAGCTCTATGAATCGGGGGTGTTTGA 904
|||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 907 GACTGCCGTTGTCGATTCCAGCAGCCGAGAGTTTCAGCTTTATGAATCGGGAGTGTTTGA 966
Query 905 TGGCTCGTGCGGAACAAACCTAAACCATGGTGTTGTTGTGGTCGGGTATGGAACCGAGAA 964
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 CGGAACTTGCGGAACAAACCTAAACCATGGTGTTGTTGTGGTCGGGTATGGAACCGAGAA 1026
Query 965 CGGTCGTGACTACTGGCTCGTGAAAAACTCGAGGGGCAATACATGGGGAGAAGCTGGCTA 1024
||||||||||||||| | |||||||||||||||||| | |||||||| || ||||||||
Sbjct 1027 TGGTCGTGACTACTGGATTGTGAAAAACTCGAGGGGCGACACATGGGGGGAGGCTGGCTA 1086
Query 1025 TATGAAGATGGCTCGCAATATTGCCAACCCAAGAGGTTTATGTGGCATTGCGATGCGAGC 1084
||||||||||||||||| |||||||| |||||||| |||||||||| || ||||||||
Sbjct 1087 CATGAAGATGGCTCGCAACATTGCCAATCCAAGAGGCCTATGTGGCATCGCAATGCGAGC 1146
Query 1085 TTCATACCCTCTCAAGAACTCGTTTTCTACCGATAAAAGCTCCA-TCGCCTAATAAAAGG 1143
|||||||||||||||||||||||||||||| |||||| | | | | ||||||||| | |
Sbjct 1147 TTCATACCCTCTCAAGAACTCGTTTTCTACGGATAAA-GTTTCGGTTGCCTAATAATATG 1205
Query 1144 AACTAAATGTATGTTATGCAAGGGATCAAGTGA-GCGAACAACCT-ATTCGA-TT-GT-G 1198
||||||||||||| ||| || ||||| || | || | | | | |||||| || | |
Sbjct 1206 AACTAAATGTATGCCATGGAACGGATCG-GTTAAGCCATTATCGTTATTCGACTTTGAAG 1264
Query 1199 -----TGAAAAATAATGTAGTCGATGGGTTTTGTTTTGTAATATATTTTGTACT-GTATG 1252
| ||||||||||| |||||| ||||| ||||||| ||||||| || | | |||||
Sbjct 1265 GAAACTAAAAAATAATGTGGTCGATTGGTTTGGTTTTGTTATATATTATGCATTTGTATG 1324
Query 1253 GGGTT--GTCAAAGTTTGGAGTTTGTATAATATTT 1285
||| | ||||| ||||| | ||||||||||||||
Sbjct 1325 GGGGTCAGTCAATGTTTGAACTTTGTATAATATTT 1359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63704491605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5