BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942987
Length=1173
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11330.1 | Symbols: ATMPK5, MPK5 | MAP kinase 5 | chr4:68920... 1834 0.0
AT2G18170.1 | Symbols: ATMPK7, MPK7 | MAP kinase 7 | chr2:79078... 132 9e-30
> AT4G11330.1 | Symbols: ATMPK5, MPK5 | MAP kinase 5 | chr4:6892055-6894149
FORWARD LENGTH=1523
Length=1523
Score = 1834 bits (993), Expect = 0.0
Identities = 1108/1164 (95%), Gaps = 6/1164 (1%)
Strand=Plus/Plus
Query 12 ATTTGaaaaaaaTGGATAAGGAAATTGAATCAGCGGCAGATCCAGGTGATACTAACATCA 71
||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||
Sbjct 78 ATTTGAAAAAAATGGCGAAGGAAATTGAATCAGCGACAGATTTAGGTGATACTAACATCA 137
Query 72 AAGGAGTTCTTGTTCATGGAGGAAGATATTTTCAATACAATGTTTATGGAAACTTGTTCG 131
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 138 AAGGAGTTCTTGTTCATGGAGGAAGATATTTTCAATACAATGTTTATGGAAACTTGTTTG 197
Query 132 AAGTCTCGAATAAATATGTTCCTCCTATTCGACCTATTGGTAGAGGAGCTTACGGTTTTG 191
|||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 AAGTTTCTAATAAGTATGTTCCTCCTATTCGACCTATTGGTAGAGGAGCTTACGGTTTTG 257
Query 192 TCTGTGCTGCAGTAGATTCGGAGACACACGAAGAGATTGCGATAAAGAAGATAGGTAAAG 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 TCTGTGCTGCAGTAGATTCGGAGACACACGAAGAGATTGCGATAAAGAAGATAGGTAAAG 317
Query 252 CCTTTGATAATAAAGTAGATGCTAAA-AGGACGTTGAGAGAGATTAAGCTACTTCGTCAT 310
|||||||||||||||||||||| ||| || || |||||||||||||||||||||||||||
Sbjct 318 CCTTTGATAATAAAGTAGATGC-AAAGAGAACATTGAGAGAGATTAAGCTACTTCGTCAT 376
Query 311 TTGGAACACGAAAACGTTGTTGTTATAAAAGATATCATAAGACCACCAAAGAAGGAAGAT 370
|| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 377 TTAGAACACGAGAACGTTGTTGTTATAAAAGATATCATTAGACCACCAAAGAAGGAAGAT 436
Query 371 TTCGTTGATGTTTATATAGTTTTTGAGTTAATGGATACTGATCTTCATCAGATTATTCGA 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 TTCGTTGATGTTTATATAGTTTTTGAGTTAATGGATACTGATCTTCATCAGATTATTCGA 496
Query 431 TCAGACCAACCTTTGAATGATGATCATTGTCAGTACTTCTTGTATCAGATTCTACGAGGA 490
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 TCAAACCAATCTTTGAATGATGATCATTGTCAGTACTTCTTGTATCAGATTCTACGAGGA 556
Query 491 ATAAAATATATTCATTCAGCAAATGTCTTACATCGTGACCTTAAGCCGAGTAATTTGCTT 550
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 557 CTCAAATATATTCATTCAGCAAATGTTTTACATCGTGACCTTAAGCCGAGTAATTTGCTT 616
Query 551 CTGAATTCGAATTGTGATCTTAAGATTACGGACTTTGGTTTGGCAAGGACGACATCTGAA 610
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 617 TTGAATTCGAATTGCGATCTTAAGATTACTGACTTTGGTTTGGCAAGGACTACATCAGAA 676
Query 611 ACAGAGTTTATGACAGAGTATGTTGTAACTCGATGGTACCGAGCACCAGAGCTGCTTCTT 670
||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 677 ACAGAGTATATGACAGAGTATGTTGTAACACGATGGTACAGAGCACCAGAGCTGCTTCTT 736
Query 671 AATAGTTCAGAGTATACATCTGCAATTGATGTTTGGTCTGTTGGTTGCATATTTGCTGAG 730
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 737 AATAGTTCTGAGTATACATCTGCTATTGATGTATGGTCTGTTGGTTGCATATTTGCTGAG 796
Query 731 ATTATGACAAGGGAACCGCTTTTCCCGGGGAAAGACTATGTTCATCAGCTTAAACTTATC 790
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 797 ATTATGACAAGGGAACCGCTTTTCCCGGGGAAGGATTACGTTCATCAGCTTAAACTTATC 856
Query 791 ACCGAGTTGATAGGATCACCTGATGGAGCGAGCCTAGAGTTTCTCAGAAGCGAGAACGCG 850
|| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 857 ACTGAGTTGATAGGATCACCTGATGGAGCGAGTCTAGAGTTTCTCAGAAGCGCGAACGCG 916
Query 851 AGAAAATATGTTAAGGAACTACCTAAGTTCCCGAGGCAGAACTTTTCAGCTAGATTTCCT 910
||||||||||||||||| |||||||||||||| || || |||||||||||||| ||||||
Sbjct 917 AGAAAATATGTTAAGGAGCTACCTAAGTTCCCAAGACAAAACTTTTCAGCTAGGTTTCCT 976
Query 911 AGTATGAATTCTACAGCTATCGATCTACTAGAGAAAATGCTCGTGTTTGATCCAGCAAAA 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 977 AGTATGAATTCTACAGCTATCGATCTACTAGAGAAAATGCTCGTGTTTGATCCAGTAAAA 1036
Query 971 CGTATCACGGTTGAGGAAGCACTGTGTCATCCCTATTTATCAGCTCTTCACGACCTTAAC 1030
||||||||||||||||||||||||||| |||| || || |||||||||||||||||||||
Sbjct 1037 CGTATCACGGTTGAGGAAGCACTGTGTTATCCTTACTTGTCAGCTCTTCACGACCTTAAC 1096
Query 1031 GATGAGCCTGTTTGTTCCAACCATTTCAGTTTCGATTTTGAGGACCCGTCTTCCACTGAA 1090
|| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1097 GACGAGCCTGTTTGTTCCAACCATTTCAGTTTCCATTTTGAGGATCCGTCTTCCACTGAA 1156
Query 1091 GAAGAGATTAAAG-AGCTTGTGTGGCTCGAATCTGTGAAGTTCAATCCTCAT-CCGACCA 1148
|||||||| |||| |||||||||||||||||||||||||||||||||||| | |||| ||
Sbjct 1157 GAAGAGAT-AAAGGAGCTTGTGTGGCTCGAATCTGTGAAGTTCAATCCTC-TGCCGAGCA 1214
Query 1149 TTTAAAACATTATTTAAGAAGGGG 1172
||||||||||||||||||||||||
Sbjct 1215 TTTAAAACATTATTTAAGAAGGGG 1238
> AT2G18170.1 | Symbols: ATMPK7, MPK7 | MAP kinase 7 | chr2:7907804-7909923
REVERSE LENGTH=1695
Length=1695
Score = 132 bits (71), Expect = 9e-30
Identities = 324/439 (74%), Gaps = 45/439 (10%)
Strand=Plus/Plus
Query 377 GATGTTTATATAGTTTTTGAGTTAATGGATACTGATCTTCATCAGATTATTCGATCAGAC 436
||||||||| | |||| |||| ||||||||||||||||||||||||||||| ||| |
Sbjct 536 GATGTTTATTTGGTTTATGAGCTAATGGATACTGATCTTCATCAGATTATTAAATCCT-C 594
Query 437 -CAA-C-CTTTGAATGATGATCATTGTCA-GTACTTCTTGTATCAGATT-CT-ACGAGGA 490
|| | |||| ||||||||| || || ||||||||||| |||| || || | ||||
Sbjct 595 TCAGTCTCTTTC--TGATGATCACTG-CAAGTACTTCTTGTTTCAG-TTGCTTA-GAGGG 649
Query 491 ATAAAATATATTCATTCAGCAAATGT-CTTACATCGTGACCTT-AAGCC-GAGTAATTTG 547
| || ||| ||||||| ||||| | ||| || || || || ||||| | | || |
Sbjct 650 TTGAAGTATCTTCATTCTGCAAACATACTT-CACCGGGAT-TTGAAGCCCGGG-AACCT- 705
Query 548 CTTC-TGAATTCGAATTGTGATCTTAAGATTACG-GACTTT-GGTTTGGCAAGGACGA-C 603
||| | ||| |||| || ||||| |||||| | || ||| || ||||| || |||| |
Sbjct 706 CTTAGTTAATGCGAACTGCGATCTCAAGATTT-GTGA-TTTCGGGTTGGCGAGAACGAGC 763
Query 604 -A---TC-TGAAACAGAGTTTATGACAGAGTATGTTGTAACTCGATGGTACCGAGCACCA 658
| | |||| ||| || ||||| |||||||| || || || |||||| |||||||
Sbjct 764 CAAGGTAATGAA-CAG--TTCATGACTGAGTATGTGGTTACACGTTGGTACAGAGCACCT 820
Query 659 GAGCTGCTTCTTAATAGTTCAGAG-TATACATC-TGCAATTGATGTTTGGTCTGTTGGTT 716
||||| |||||| | || | | ||| | | | || ||||||| ||||| |||||||
Sbjct 821 GAGCTTCTTCTTTGTTGTG-ATAACTATGGAACCTCCA-TTGATGTATGGTCGGTTGGTT 878
Query 717 GCATATTTGCTGAGATTAT-GACAAGGGAACCGCTTTTCCCGGGGAA-AGACTATG-TTC 773
||||||| || |||||| | | | || ||||| |||| || || || ||| ||| ||
Sbjct 879 GCATATTCGCGGAGATTCTTGGTA-GGAAACCGATTTTTCCAGG-AACAGA--ATGCTTG 934
Query 774 A-TCAGCTTAAACTTATCA 791
| ||||||||| || ||||
Sbjct 935 AATCAGCTTAAGCTAATCA 953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57580025115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5