BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942990

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G11360.1 | Symbols: RHA1B | RING-H2 finger A1B | chr4:690601...   675    0.0  


> AT4G11360.1 | Symbols: RHA1B | RING-H2 finger A1B | chr4:6906014-6906759 
FORWARD LENGTH=746
Length=746

 Score =  675 bits (365),  Expect = 0.0
 Identities = 460/505 (91%), Gaps = 9/505 (2%)
 Strand=Plus/Plus

Query  14   CTCATCA-TCATGGGTCTTCCAACAGATTTCAAGGAGCTTCAGATTCCAGAATACGTACT  72
            |||| || ||||||||||||||||||||||||| ||||||||||||||||  ||||||||
Sbjct  44   CTCA-CACTCATGGGTCTTCCAACAGATTTCAAAGAGCTTCAGATTCCAGGTTACGTACT  102

Query  73   TAAAACACTTTACGTCATCGGTTTCTTCAGAGACATGGTCGATGCTCTTTGTCCATACAT  132
             |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct  103  AAAAACACTTTACGTCATCGGTTTCTTTAGAGACATGGTCGATGCTCTTTGTCCTTACAT  162

Query  133  CGGTCTACCTAGTTTTCTTGACCACCACGAGACCTTTCGATCCGACCCGACCC-ATCACG  191
            ||||||||| ||||||||||||||| ||||||||| ||||||||||||||||| | | ||
Sbjct  163  CGGTCTACCAAGTTTTCTTGACCACAACGAGACCTCTCGATCCGACCCGACCCGA-CTCG  221

Query  192  CTCTCTCCACGTCAGCGAGTCTTGCCAACGAGTTAATCCCAGTGGTTCGGTTCTCGGATC  251
            |||||||||||||||| | ||||||||||||||||||||| |||||||| ||||| ||||
Sbjct  222  CTCTCTCCACGTCAGCAACTCTTGCCAACGAGTTAATCCCGGTGGTTCGTTTCTCCGATC  281

Query  252  TCTTGACCGATCCGGAAGATTGCTGTACGGTTTGTTTATCCGATTTTG-ACTCCGACGAT  310
            | || |||||||||||||||||||| |||||||| ||||||||||||| | |||||||||
Sbjct  282  TTTTAACCGATCCGGAAGATTGCTGCACGGTTTGCTTATCCGATTTTGTA-TCCGACGAT  340

Query  311  ATGATTAGACAGCTACCAAACTGTGGACACGTGTTCCACCATCGTTGCTTAGATCGTTGG  370
            | |||||||||||| || || |||||||||||||| || |||||||| ||||| ||||||
Sbjct  341  AAGATTAGACAGCTGCCGAAGTGTGGACACGTGTTTCATCATCGTTGTTTAGACCGTTGG  400

Query  371  ATCGTTGACTGCAACAAGATGACTTGTCCGATTTGTCGGAACCGGTTCTTACCGGAAGAA  430
            ||||||||||| || ||||| || || ||||||||||||||||||||||||||||| |||
Sbjct  401  ATCGTTGACTGTAATAAGATAACGTGCCCGATTTGTCGGAACCGGTTCTTACCGGAGGAA  460

Query  431  AAGCCCACGCCGTTTGATTGGGGTTCTTCAGATTGGTTCAGAGATGAAGTGGAGAGTACC  490
            ||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct  461  AAGTCCACGCCGTTTGATTGGGGTACTTCAGATTGGTTTAGAGATGAAGTGGAGAGTACC  520

Query  491  AACTAAT---GATGGTTTTACtttt  512
            |||||||   |||||||||||||||
Sbjct  521  AACTAATAATGATGGTTTTACTTTT  545



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24664966177


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5