BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942992
Length=520
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11370.1 | Symbols: RHA1A | RING-H2 finger A1A | chr4:690767... 628 1e-179
AT4G11360.1 | Symbols: RHA1B | RING-H2 finger A1B | chr4:690601... 595 1e-169
> AT4G11370.1 | Symbols: RHA1A | RING-H2 finger A1A | chr4:6907674-6908386
FORWARD LENGTH=713
Length=713
Score = 628 bits (340), Expect = 1e-179
Identities = 452/507 (89%), Gaps = 4/507 (1%)
Strand=Plus/Plus
Query 1 TCTCTATCTTTATCTCACTCATGGGTCTTCAAGAAGATTTCATCAAGGAGCTTCAGATTC 60
||||||||||| ||| | |||||||||||| ||||||||||||| |||||||||||||
Sbjct 84 TCTCTATCTTTCTCTAAATCATGGGTCTTCCTGAAGATTTCATCACCGAGCTTCAGATTC 143
Query 61 CAGGGTACATAGTAAAGATACTTTACGTCATCGGTTTCTTTAGAGACATCGTCGACACTC 120
|| | |||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 144 CAAGTTACATATTAAAGATACTTTACGTCATCGGTTTCTTTAGAGACATCGTCGATGCTC 203
Query 121 TTTGTCCTTACATTGGTCTACCTAGTTTTCTTGACCACCACGAGACCTCT-CGACCTGAC 179
||||||||||||||||||||||| ||||||| |||||| ||||||||||| | ||| ||
Sbjct 204 TTTGTCCTTACATTGGTCTACCTCGTTTTCTAGACCACAACGAGACCTCTGC-ACCCGAT 262
Query 180 CCGGCCCGACACGGTCTCTCCACGTCAGCGAGTCTTGCCAACGAGTTAATCCCGGTGGTT 239
| | ||||||||| |||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 263 CTGACCCGACACGCTCTCTCTACGTCAGCGAGTCTTGCTAACGAGTTGATCCCGGTGGTT 322
Query 240 CGGTTCTCCGATCT-CTTGACCGATCCAGAAGATTGCTGCACGATTTGTTTATCCGATTT 298
|||||||| ||||| | ||||||||| |||||||| || ||| ||||||| || |||||
Sbjct 323 CGGTTCTCGGATCTTCC-GACCGATCCGGAAGATTGTTGTACGGTTTGTTTGTCAGATTT 381
Query 299 TGACTCCAACGATAAGATTAGACAGCTACCGAAGTGTGGACACGTGTTTCACCAACGTTG 358
||| ||| |||||||| |||| |||||||| |||||||||||||||||||| || |||
Sbjct 382 TGAGTCCGACGATAAGGTTAGGCAGCTACCCAAGTGTGGACACGTGTTTCATCATTATTG 441
Query 359 TTTAGACCGTTGGATCGTTGACTTCAACAAGATGAAGTGTCCAATTTGTCGGAACCGGTT 418
||||||||||||||||||||||| |||||||||||| ||||| |||||||| |||||||
Sbjct 442 TTTAGACCGTTGGATCGTTGACTACAACAAGATGAAATGTCCGGTTTGTCGGCACCGGTT 501
Query 419 CTTACCGGAAGAAAAGTACACGCAGTGTGATTGGGGTTCTGGTTCAGATTGGTTTAATGG 478
||||||| |||||||||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 502 CTTACCGAAAGAAAAGTACACGCAATCTGATTGGGGTTCTGGTTCAGATTGGTTTAGTGA 561
Query 479 TGAAGTGGAAAGTTCCAACTAATTGGT 505
||||||||||||| |||||||||||||
Sbjct 562 TGAAGTGGAAAGTACCAACTAATTGGT 588
> AT4G11360.1 | Symbols: RHA1B | RING-H2 finger A1B | chr4:6906014-6906759
FORWARD LENGTH=746
Length=746
Score = 595 bits (322), Expect = 1e-169
Identities = 450/509 (88%), Gaps = 20/509 (4%)
Strand=Plus/Plus
Query 1 TCTCTATCTTTATCT--CACTCATGGGTCTT-CAAGAAGATTTCATCAAGGAGCTTCAGA 57
||||||||||| ||| |||||||||||||| ||| |||||||| || ||||||||||
Sbjct 31 TCTCTATCTTTCTCTCACACTCATGGGTCTTCCAA-CAGATTTCA--AA-GAGCTTCAGA 86
Query 58 TTCCAGGGTACATAGTAAAGATACTTTACGTCATCGGTTTCTTTAGAGACATCGTCGACA 117
||||||| ||| || |||| | |||||||||||||||||||||||||||||| |||||
Sbjct 87 TTCCAGGTTACGTACTAAAAACACTTTACGTCATCGGTTTCTTTAGAGACATGGTCGATG 146
Query 118 CTCTTTGTCCTTACATTGGTCTACCTAGTTTTCTTGACCACCACGAGACCTCTCGA-CCT 176
|||||||||||||||| |||||||| ||||||||||||||| |||||||||||||| ||
Sbjct 147 CTCTTTGTCCTTACATCGGTCTACCAAGTTTTCTTGACCACAACGAGACCTCTCGATCC- 205
Query 177 GACCCGGCCCGACACGGTCTCTCCACGTCAGCGAGTCTTGCCAACGAGTTAATCCCGGTG 236
|||||| |||||| || ||||||||||||||| | |||||||||||||||||||||||||
Sbjct 206 GACCCGACCCGACTCGCTCTCTCCACGTCAGCAACTCTTGCCAACGAGTTAATCCCGGTG 265
Query 237 GTTCGGTTCTCCGATCTCTTGACCGATCCAGAAGATTGCTGCACGATTTGTTTATCCGAT 296
||||| ||||||||||| || |||||||| ||||||||||||||| |||| |||||||||
Sbjct 266 GTTCGTTTCTCCGATCTTTTAACCGATCCGGAAGATTGCTGCACGGTTTGCTTATCCGAT 325
Query 297 TTTG-ACTCCAACGATAAGATTAGACAGCTACCGAAGTGTGGACACGTGTTTCACCAACG 355
|||| | ||| ||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 326 TTTGTA-TCCGACGATAAGATTAGACAGCTGCCGAAGTGTGGACACGTGTTTCATCATCG 384
Query 356 TTGTTTAGACCGTTGGATCGTTGACT-TCAACAAGATGAA-GTGTCCAATTTGTCGGAAC 413
|||||||||||||||||||||||||| | || ||||| || ||| || ||||||||||||
Sbjct 385 TTGTTTAGACCGTTGGATCGTTGACTGT-AATAAGAT-AACGTGCCCGATTTGTCGGAAC 442
Query 414 CGGTTCTTACCGGAAGAAAAGTACACGCAGTGTGATTGGGGTTCTGGTTCAGATTGGTTT 473
|||||||||||||| ||||||| ||||| || |||||||||| || | |||||||||||
Sbjct 443 CGGTTCTTACCGGAGGAAAAGTCCACGCCGTTTGATTGGGGTACT--T-CAGATTGGTTT 499
Query 474 A-ATGGTGAAGTGGAAAGTTCCAACTAAT 501
| | | ||||||||| ||| |||||||||
Sbjct 500 AGA-GATGAAGTGGAGAGTACCAACTAAT 527
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24865902765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5