BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942994

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G11550.1 | Symbols:  | Cysteine/Histidine-rich C1 domain fam...   220    6e-57


> AT4G11550.1 | Symbols:  | Cysteine/Histidine-rich C1 domain family 
protein | chr4:6996823-6998829 REVERSE LENGTH=2007
Length=2007

 Score =  220 bits (119),  Expect = 6e-57
 Identities = 282/356 (79%), Gaps = 30/356 (8%)
 Strand=Plus/Plus

Query  23   ATGGAATCTGAGG---GTGAGGGAGTGTCACTACCGTTGATGCACAAGCATCCTATGACG  79
            ||||||| |||||    ||||| |||||||||||||||||| ||| |||||| ||||| |
Sbjct  1    ATGGAATATGAGGAATATGAGGAAGTGTCACTACCGTTGATCCACGAGCATCTTATGATG  60

Query  80   CCTTGGAATGATCTGCGGAAAGG-TCATTGTTGTGGACACTTC-CTTGCTATCAGTGATG  137
            || || ||| ||||     | || | |||| ||||||| ||||  ||  || ||||| ||
Sbjct  61   CCGTGTAATTATCT-AACTAGGGCTGATTGCTGTGGACGCTTCGGTT-TTACCAGTGGTG  118

Query  138  GTTATTACTGCGAAATG-TGTGA-CTTCTTTGTTCACAAGAAATGTGTAGACGAGTCCAC  195
            ||||||||||||||| | ||| | |||||| ||||| | ||||||||| || || ||| |
Sbjct  119  GTTATTACTGCGAAA-GCTGT-AGCTTCTTGGTTCATAGGAAATGTGTTGAAGATTCCTC  176

Query  196  GGAATATATCGAACACCCACTC-CACTCCATTCACACTCTGAAGCTTCTTCAAAGTAAAC  254
             |||||||| ||||||||  || |||||  ||||| |||| |||   |||||||||||||
Sbjct  177  TGAATATATTGAACACCC-GTCTCACTCTGTTCACCCTCTTAAG---CTTCAAAGTAAAC  232

Query  255  TAGAGTTTAGATGTGATGTATGTGATGTACGTGATGTCATGGGCATCGTGAATCTATGCT  314
             |||   || ||||||| |||||||  ||    | |  |  || |||||| |||||||||
Sbjct  233  CAGACCATATATGTGATATATGTGA--TA----A-G--A--GG-ATCGTGGATCTATGCT  280

Query  315  ATCGTTGTGAGATCTGTGACTTCGAA-GTGGATCTATACTGTGCAAAGTACCCACC  369
            ||| ||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct  281  ATCATTGTGAGATCTGTGACTTC-AATGTGGATCTATACTGTGCAAAGTACCCACC  335



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18548799381


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5