BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942999
Length=997
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11410.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1531 0.0
> AT4G11410.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr4:6944918-6947333 REVERSE LENGTH=1310
Length=1310
Score = 1531 bits (829), Expect = 0.0
Identities = 946/1002 (94%), Gaps = 9/1002 (1%)
Strand=Plus/Plus
Query 1 GAAGACA-AAACAACATCAAA-ATGTGGCCATTTTGGTGGAAAGGAGCATCTGGGTTCTC 58
||||| | |||||| | |||| |||||||| |||||||||||||||||||||||||||||
Sbjct 127 GAAGATAGAAACAA-AACAAACATGTGGCCTTTTTGGTGGAAAGGAGCATCTGGGTTCTC 185
Query 59 AGCTCGTTCCACAGCTGAAGAAGTCACTCATGGAATCGATGGTACTGGTCTCACAGCTAT 118
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 186 TGCTCGTTCCACAGCTGAAGAAGTCACTCATGGAATCGATGGTACTGGTCTCACTGCTAT 245
Query 119 CGTCACAGGAGCATCAAGTGGTATTGGGGAAGAGACTACGCGTGTTCTTTCTCTTCGTGG 178
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 246 CGTCACAGGAGCATCAAGTGGTATTGGGGAAGAGACTACTCGTGTTCTTGCTCTTCGTGG 305
Query 179 TGTTCATGTTGTAATGGCGGTAAGGAACATAGATTCTGGTAATCAAGTTAGAGAAAAGAT 238
||||||||||||||||||||||||||| | |||||||||||||||||| ||||| |||||
Sbjct 306 TGTTCATGTTGTAATGGCGGTAAGGAATACAGATTCTGGTAATCAAGTCAGAGATAAGAT 365
Query 239 ACTTAAGGAAACACCTGAGGCTAAGATTGATGTAATGAAGTTAGATCTTAGCTCTATGGC 298
||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 366 ACTTAAGGAAATACCTCAGGCTAAGATTGATGTAATGAAGTTGGATCTTAGCTCTATGGC 425
Query 299 TTCTGTCAGGAGCTTTGCATCAGAGTA-CAAGTCTTTGAACCATCCCTTGAATCTTCTCA 357
||||||||||||||||||||||||||| | |||||||| ||| |||||||||||||||||
Sbjct 426 TTCTGTCAGGAGCTTTGCATCAGAGTATC-AGTCTTTGGACCTTCCCTTGAATCTTCTCA 484
Query 358 TCAATAATGCAGGGATTATGGCATGTCCCTTCATGCTTTCTAGCGACAACATTGAATTAC 417
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 485 TCAATAATGCGGGGATTATGGCATGTCCCTTCTTGCTTTCTAGCGACAACATTGAATTAC 544
Query 418 AGTTTGCAACCAATCATTTGGGTCATTTTCTGTTGACAAACCTTCTTTTGGAGACAATGA 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 545 AGTTTGCAACCAATCATTTGGGTCATTTTCTGTTGACAAACCTTCTTTTGGAGAGGATGA 604
Query 478 AGAAAACAGCTAATGAAAGCAATAGAGAAGGAAGAATTGTTATTGTCTCGTCAGAAGGTC 537
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 605 AGAAAACAGCTAGTGAAAGCAATAGAGAAGGAAGAATTGTTATTGTCTCATCAGAAGGTC 664
Query 538 ATCGATTTGCTTACCGGGAAGGTGTTCGGTTTGACAAAATAAATGATGAAGCAAGTTACA 597
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 665 ATCGATTTGCTTACCGGGAAGGTGTTCAGTTTGACAAAATAAATGATGAAGCAAGGTACA 724
Query 598 ATACTTTGCAAGCATATGGTCAGTCAAAGCT-GTGTAACATATTGCACGCTACTGAGCTC 656
||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||
Sbjct 725 ATACTTTGCAAGCATATGGTCAGTCAAAGCTCG-GTAACATCTTGCACGCTACTGAGCTC 783
Query 657 GCTAGGCAAATCAAGGAACAAGGTGTGAATATCACTGCTAATTCACTTCATCCCGGATCC 716
||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 784 GCTAGGCTATTCAAGGAACAAGGTGTGAATATCACTGCTAATTCACTTCATCCTGGATCC 843
Query 717 ATTATGACCAATCTTTTGCGCTACCACAGCTTCATAAATACGATTGGTAATGCGGTGGGA 776
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 844 ATTATGACCAATCTTTTACGCTACCACAGCTTCATAAATACAATTGGTAATGCGGTGGGG 903
Query 777 AAGTATGTGCTGAAGAGTATTCCCCAGGGAGCGGCAACTACGTGTTATGCTGCGCTACAT 836
||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 904 AAGTATGTGCTGAAGAGCATTCCACAGGGAGCGGCAACTACCTGTTATGCTGCGCTTCAT 963
Query 837 CCTCAGGCAAAAAGAGTGAGTGGAGAATACTTGATGGACAGCAACATATCTAACCCTCAT 896
|||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| ||
Sbjct 964 CCTCAGGCAAAAGGAGTGAGTGGAGAATACTTGATGGACAACAACATATCTGACCCTAAT 1023
Query 897 TCTCAGGGTAAAGACAAAGATTTAGCCAAGAAACTATGGGAGTTCAGCTTGAC-CTTAAC 955
||||||||||||||||||||| | ||||| |||||||||||||| ||||||| || |||
Sbjct 1024 TCTCAGGGTAAAGACAAAGATCTGGCCAAAAAACTATGGGAGTTTAGCTTGAGGCT-AAC 1082
Query 956 TGGTGAAGAAGAATCATAGATACTTTTGCTAAGTTACAATCT 997
||||||||||||||||||||||||||| | |||||||| |||
Sbjct 1083 TGGTGAAGAAGAATCATAGATACTTTTTCGAAGTTACAGTCT 1124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48827590884
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5