BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943001
Length=1892
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11440.1 | Symbols: | Mitochondrial substrate carrier famil... 2109 0.0
> AT4G11440.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr4:6955601-6958553 FORWARD LENGTH=2038
Length=2038
Score = 2109 bits (1142), Expect = 0.0
Identities = 1427/1562 (91%), Gaps = 30/1562 (2%)
Strand=Plus/Plus
Query 348 AAGGCTAATTCTCAATTGTCATCGACTCCACAGCCGAGGGTTAGATTATTGGGAGTGGCT 407
|||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 440 AAGGCTAAGTCTCAATTGTCATCGACTCCACAGTCTAGGGTTAGATTATTGGGAGTGGCT 499
Query 408 GAAAAGATGTACAGTTTCGATCCGTATAACC-AAAGAAGTTGGTTTAATCAGAGTGATGG 466
||||||||||| ||||||||||||||||||| ||| ||||| ||| ||||||| ||||||
Sbjct 500 GAAAAGATGTATAGTTTCGATCCGTATAACCGAAA-AAGTTTGTTGAATCAGACTGATGG 558
Query 467 AGCCAAGTCTATAAGTGGTTTTTGCAAAGAGAATGGTATTCTGTTCGAGGCTAGATGGAA 526
| | ||||||||| |||||| |||||||| || |||| ||| ||||||||||||||||||
Sbjct 559 ATCTAAGTCTATATGTGGTTCTTGCAAAGGGATTGGTTTTCCGTTCGAGGCTAGATGGAA 618
Query 527 GACATTGTATAGCTGGATGGAAGGAGTAG-TTCCCACTTCTACTAGATATCATGAAGAAG 585
||| ||||||||||||||||||||||| | |||| | |||||||||||||||||||||||
Sbjct 619 GACGTTGTATAGCTGGATGGAAGGAGT-GCTTCCAAGTTCTACTAGATATCATGAAGAAG 677
Query 586 CGGCTGAGATTGAGAAGAGAGAACATTTTGAAGACCCTATTCCTAATCC-GTTGAGCAGT 644
|||||||||||||||||||||| ||||||||| | ||||| |||||| | ||||||||
Sbjct 678 GGGCTGAGATTGAGAAGAGAGAAAATTTTGAAGGCTGTATTCTTAATCCAG-TGAGCAGT 736
Query 645 AAAGCAGAACTCGCATCAAGAAATGCCAATAGTTGTGATTGTGTCTTTGATACAACTGGT 704
|||| |||||||||||||||||||| | || |||||||||||||||||||| | | ||||
Sbjct 737 AAAGAAGAACTCGCATCAAGAAATGGCGATGGTTGTGATTGTGTCTTTGATGCCATTGGT 796
Query 705 GCCAA-GAGCCAATCAACTGTAACTGAACCAAGGAGTCCTT-TATTAGCAAGC-GTCGCA 761
||||| || |||||||||||||| ||||||||||||| ||| ||||||||| | || |||
Sbjct 797 GCCAAGGA-CCAATCAACTGTAATTGAACCAAGGAGT-CTTCTATTAGCAA-CGGTTGCA 853
Query 762 GGCTCATTGGTAGACACCAGAATATCAAGATCTAATGATGTGAA-TGATCTCTCTTTGCT 820
| ||| |||||||||| ||| |||| ||||||||||||||||| | |||||| ||||||
Sbjct 854 GAATCAGTGGTAGACACTAGAGTATCTAGATCTAATGATGTGAACT-ATCTCTTTTTGCT 912
Query 821 TTGCAAAGATAGGTGTGCCAATAATAAAGGACTGAACATAATAAGTTCAAAATGTAGCAC 880
|| |||||||||||||| ||||||||||||| |||| || ||||||||||||||||||||
Sbjct 913 TTACAAAGATAGGTGTGTCAATAATAAAGGAGTGAATATGATAAGTTCAAAATGTAGCAC 972
Query 881 GGATTGCGTTACAGAGGTTTCTTCTTCAGGGAATAACTCAGACGAAGACAGCTTTTCTAT 940
|||||| | | | ||||||||||||||||||||||||| |||||||||| |||| |||||
Sbjct 973 GGATTGTGATGCTGAGGTTTCTTCTTCAGGGAATAACTTAGACGAAGACTGCTTATCTAT 1032
Query 941 TGTTGAAAATAAACGGTTGCTTGAGAGAGATAGAAAAGACCAAGAGACTGAAGTTTGTTC 1000
||||||||||||| ||||||||||| ||||||||| ||| ||||||||||||||||||
Sbjct 1033 CGTTGAAAATAAACAGTTGCTTGAGAAAGATAGAAATGACAAAGAGACTGAAGTTTGTTT 1092
Query 1001 GTCCTCGGCAGAGACTCCTACTTACGCCTTTGTTGCCAAACAGCGACATGCTTTTGCTGG 1060
|||||| |||| || ||||||||| | || |||| |||||| ||||||||||||||||
Sbjct 1093 GTCCTCTCCAGAAACGACTACTTACG-C-TT-TTGCTAAACAGAGACATGCTTTTGCTGG 1149
Query 1061 TGCGTTGGCAGGCATAAGCGTCAGTCTTTGTCTTCATCCACTTGATACCGTTAAGACAAT 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 TGCGTTGGCAGGCATAAGCGTCAGTCTTTGTCTTCATCCACTTGATACCGTTAAGACAAT 1209
Query 1121 GATTCAGTCATGCCGCTTGGGAG-AGAAGTCTCTATGCAATACTGGGAGATCAATTATAT 1179
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1210 GATTCAGTCATGCCGCTTGG-AGGAGAAGTCTCTATGCAATACTGGGAGATCAATTATAT 1268
Query 1180 CAGAAAGAGGTTTTTCTGGACTTTATCGGGGGATTTCTAGTAACATTGTCTCATCAGCTC 1239
|||||||||||||||||||||||||||| |||||| |||| ||||||| |||||||||||
Sbjct 1269 CAGAAAGAGGTTTTTCTGGACTTTATCGAGGGATTGCTAGCAACATTGCCTCATCAGCTC 1328
Query 1240 CTATCTCTGCCCTCTATACGTTCACTTATGAAACCGTTAAAGGAACTCTGCTCCCTCTTT 1299
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1329 CTATCTCTGCCCTCTATACGTTCACTTATGAAACCGTTAAAGGAACTCTGCTTCCTCTTT 1388
Query 1300 TTCCTAAGGAGTATTGCTCCCTTA-CCCACTGCATAGCTGGTGGTTCTGCAAGCATTGCA 1358
|||||||||| ||||||||||| | |||||||| ||||||||||||||||||||||||||
Sbjct 1389 TTCCTAAGGAATATTGCTCCCT-AGCCCACTGCTTAGCTGGTGGTTCTGCAAGCATTGCA 1447
Query 1359 ACTTCTTTTATCTTCACGCCAAGTGAGCGCATAAAACAGCAGATGCAAGTCAGTTCACAT 1418
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1448 ACTTCTTTTATCTTCACGCCTAGTGAGCGCATAAAACAGCAGATGCAAGTCAGTTCACAT 1507
Query 1419 TATCGTAATTGCTGGACCGCATTAGTTGGAATCATCCAAAAGGGTGGTCTGCTTTCTTTA 1478
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1508 TATCGCAATTGCTGGACCGCATTGGTTGGAATCATCCAAAAGGGTGGTCTGCTTTCTTTA 1567
Query 1479 TATGCTGGATGGACTGCAGTGCTATGTAGAAATATCCCACACTCAATCATTAAGTTCTAT 1538
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1568 TATGCTGGATGGACTGCAGTGCTATGTAGAAATATCCCGCACTCAATCATTAAGTTCTAT 1627
Query 1539 GTCTATGAAAACATGAAGCAGGTGGTATTACCATCTATAGGTCCTCGTGGTGAACCGGCT 1598
|||||||||||||||||||| ||||||||||||| ||| ||| |||||||| ||||
Sbjct 1628 GTCTATGAAAACATGAAGCAAATGGTATTACCATCCCCAGGCCCTTGTGGTGAAATGGCT 1687
Query 1599 CAACCCACGACATTACAAACGCTCACCTGTGGAGGACTAGCCGGATCTGCTGCTTCTTTC 1658
|||||||| |||||||||||||| ||||||||||||||||| |||||||||||| |||||
Sbjct 1688 CAACCCACAACATTACAAACGCTTACCTGTGGAGGACTAGCGGGATCTGCTGCTGCTTTC 1747
Query 1659 TTCACGACCCCATTTGATGTAGTAAAAACAAGGTTACAAACTCAGATTCCTGGATCTAGG 1718
||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1748 TTCACAACCCCATTTGATGTAGTAAAAACAAGATTACAAACTCAGATTCCCGGATCTAGA 1807
Query 1719 AACCAACAACCTAATGTCTATCAAACTTTTCAATCAATACGCAAG-CAAGAAGGTTTGAG 1777
|||||||| |||| ||||||||||||| ||||||||||||| ||| ||||||||| ||||
Sbjct 1808 AACCAACATCCTAGTGTCTATCAAACTCTTCAATCAATACG-AAGGCAAGAAGGTCTGAG 1866
Query 1778 AGGGCTATACAGAGGCTTGAGCCCCAGACTTGTGATGTACATGTCACAAGGAGCTATATT 1837
|||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||
Sbjct 1867 AGGGCTATACAGAGGCTTGATCCCCAGACTAGTGATGTACATGTCGCAAGGAGCTATATT 1926
Query 1838 CTTTGCTTCATATGAATTTTACAAG----T-CTCTCT--AGAAGCGGCGCAACCCAATTC 1890
||||||||| ||||||||||||||| | |||||| || ||||||||| || ||| |
Sbjct 1927 CTTTGCTTCGTATGAATTTTACAAGAGCGTACTCTCTCTAGCAGCGGCGCAGCCTAATAC 1986
Query 1891 GT 1892
||
Sbjct 1987 GT 1988
Score = 315 bits (170), Expect = 1e-84
Identities = 233/261 (89%), Gaps = 13/261 (5%)
Strand=Plus/Plus
Query 7 TGTAAGATAAGCAAATGGCTTCTTCTACTAAAGGACCTGTTAAGAAGGGTCGTCAGCCTT 66
||||||||||||||||| |||||||||| |||||| |||||||||| | || ||
Sbjct 138 TGTAAGATAAGCAAATGTCTTCTTCTACGAAAGGATCTGTTAAGAA-----G--AG--TT 188
Query 67 CGATTAAACATAGTTGCAACTTAGCTGAGGCTAAGAGGAAGCTTTCAAAGATCAGTGATC 126
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 189 CGATTAAACATAGTTGCAACTTAGCTGAGGTTAAGAGGAAGCTTTCAAAGATCAGTGATC 248
Query 127 ATCATTCACATGTAGATTATGCGTATGTTTTCCAGAGGGACAGTAG-GAAACGAGGAGAG 185
|||||||||||||||| ||||| |||| ||||||||||||| ||| |||| ||| |||
Sbjct 249 ATCATTCACATGTAGAGTATGCTTATGCCTTCCAGAGGGACAATAGAGAAA-GAGTAGAT 307
Query 186 ACTAAGTTGAGTCAAATCCTGAGCAGGGATGCGTTGATATCAGCCGTTGATTTGATT-TG 244
|||| ||||||||||||||| || |||||||||||||||||||||||||||||| || ||
Sbjct 308 ACTAGGTTGAGTCAAATCCTCAGTAGGGATGCGTTGATATCAGCCGTTGATTTG-TTGTG 366
Query 245 GGATCGCTCGGATTTTGTTTC 265
||||||||||| |||||||||
Sbjct 367 GGATCGCTCGGGTTTTGTTTC 387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93674216970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5