BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943011
Length=1804
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11560.1 | Symbols: | bromo-adjacent homology (BAH) domain-... 2822 0.0
> AT4G11560.1 | Symbols: | bromo-adjacent homology (BAH) domain-containing
protein | chr4:6999896-7003493 REVERSE LENGTH=2011
Length=2011
Score = 2822 bits (1528), Expect = 0.0
Identities = 1712/1798 (95%), Gaps = 23/1798 (1%)
Strand=Plus/Plus
Query 19 CAATGGTGTTGTCTCGGCGATTTGCTCAAGTGTCGAGTGACGAAGAAGACGATGTACCGA 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 47 CAATGGTGTTGTCTCGGCGATTTGCTCAAGTGTCGAGTGACGAAGAAGACGATGTACCGA 106
Query 79 TTACTAGGTCTAAGGGAAGAAACTCAGCGAGTCCTGAGGAAACTTTGGGGAAACGGAGGA 138
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 107 TTACTAGGTCTAAGGGAAGAAACTCGGCGAGTCCTGAGGAATCTTTGGGGAAACGGAGGA 166
Query 139 AGCGTAAGACGGTGAAGCTATACgaagattttgaagagaaggaagcggagaggaagagga 198
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 167 AGCGTAAGACGGTGAAGCTATACGAAGATTTTGAAGAGAAGGAAGCGGATAGGAAGAAGA 226
Query 199 agagaaaggggaagaaggaggaggatgatgatgaggatatggcgga-gga-a-gaggagg 255
||||||| ||| ||| | |||| | ||||||||||||||||| ||| | || ||
Sbjct 227 AGAGAAA-GGG--GAA-TA--AGGA-G--GATGAGGATATGGCGGAGGGAGATGATGATC 277
Query 256 aggaggaggaaggaacgcca-ccggagg--g-tg-a-a-gaagatgaagaagaagaagag 308
||| |||||||| ||| | ||||||| | | | | ||||| |||||||||||||||
Sbjct 278 AGGCGGAGGAAGAAAC-AAATCCGGAGGCTGAAGAAGAGGAAGACGAAGAAGAAGAAGAG 336
Query 309 aagCCTGATGATGCGTGTCCTCTTGGTGAATCGGTTACTATTACGGGTAAAGGAAAAGGG 368
||||||||||||||||||||| ||||||| ||||||| | ||||||||||||||||||||
Sbjct 337 AAGCCTGATGATGCGTGTCCTGTTGGTGATTCGGTTAATGTTACGGGTAAAGGAAAAGGG 396
Query 369 AAAAGAACTCATTTCAAGCAATTTGCGTATGATGGTAACACTTATGATCTGGAGGATCCG 428
||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||
Sbjct 397 AAAAGAACTCATTTCAACCAATTTGCTTATGATGGTAACACTTATGATCTGGAGGTTCCG 456
Query 429 GTGCTGCTGGTTCCTGAGGACAAAAGTCAAAAACCATATGTTGCAATTATTAAGGATATT 488
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 GTGTTGCTGGTTCCTGAGGACAAAAGTCAAAAACCATATGTTGCAATTATTAAGGATATT 516
Query 489 ACCCAAACTAAAGATGGAAGTATGATGATTCTGGGACAGTGGTTTTATCGCCCCGAAGAA 548
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 517 ACCCAAACTAAAGATGGAAGCATGATGATTCTGGGACAGTGGTTTTATCGCCCCGAAGAA 576
Query 549 GCAGAGAAAAGGGGTGGTGGAAACTGGCAATCAAGTGATACAAGAGAACTGTTCTACAGT 608
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 577 GCAGAGAAAAGGGGTGGTGGAAACTGGCAATCAAGTGATACACGAGAACTTTTCTACAGT 636
Query 609 TTCCATCGTGATGAAGTGCCAGCAGAATCTGTGATGCACAGATGTGTTGTTTATTTTGTC 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 TTCCATCGTGATGAAGTGCCAGCAGAATCTGTGATGCACAGATGTGTTGTTTATTTTGTC 696
Query 669 CCGGCCCATAAACAACTTCCGAAACGCAAAAATAACCCTGGATTTATTGTACGGAAGGTC 728
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 697 CCGGCCCATAAACAACTTCCAAAACGCAAAAATAACCCTGGATTTATTGTACGAAAGGTC 756
Query 729 TATGATACTGTTGAAAAGAAGCTGTGGAAGCTGACTGACAAAGACTATGAAGACTCAAAA 788
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 TATGATACCGTTGAAAAGAAGCTGTGGAAGCTGACTGACAAAGACTATGAAGACTCAAAA 816
Query 789 CAACGTGAAATCGACGTTCTTGTCGACAAGACCATG-TCGGTATTGGGTGATCTTCCGGA 847
|||||||||||||| ||||||||| | ||||||||| | |||||||||||||| |||||
Sbjct 817 CAACGTGAAATCGATGTTCTTGTCAAAAAGACCATGAAC-GTATTGGGTGATCTCCCGGA 875
Query 848 TCTTGAATCTGAGGAAATGTTTGTTGACCAGGAGAATGTGTTGAAGGCCAAAAGATCTTT 907
|||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 876 CCTTGAATCTGAGGATATGCTTGTTGACCAGGAAAATGTGTTGAAGGCCAAAAGATCTTT 935
Query 908 TCGGAAAGCGAACATAAGTCCTGTGGATGTTAGAAGGGAGGAAGACGCCTCTTTAAAGGC 967
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 TCGGAAAGTAAACATAAGTCCTGTGGATGTTAGAAGGGAGGAAGACGCCTCTTTAAAGGC 995
Query 968 TGAAACTCCTGGAAGTGGTGCGGGTATTTCATCAGAGCATTATGCTATCTTAGAGAAGTT 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 TGAAACTCCTGGAAGTGGTGCGGGTATTTCATCAGAGCATTATGCTATCTTAGAGAAGTT 1055
Query 1028 TGATTCACTAACAGGTGATGCTCATCGTGACAAGTGTTTGGGGAAGCTTCTGGAGGCAGT 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 TGATTCACTAACAGGTGATGCTCATCGTGACAAGTGTTTGGGGAAGCTTCTGGAGGCAGT 1115
Query 1088 CCATCACATATGTTATATCCCAGAGAACAAGCAGGCTGGCGACGAAGCAAAGGTGGGTTC 1147
||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1116 CCAGCACATATGTTATATCCCTGAGAACAAACAGGCTGGCGACGAAGCAAAGGTGGGTTC 1175
Query 1148 AGATGGATCTCATTTTGAACAGGATGGGAAAAATACAAAGCCGGAAAATGGAAAGGATGA 1207
||||| ||||||| |||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 1176 AGATGCATCTCATCTTGAACAGGATGAGAAAGACACAAAGCCGGAAAATGGAAAGGATGA 1235
Query 1208 AAAATTTCTCTGGCCAGATGCTGCTGTTCCTCCAGTGTGTGCTCTTGAGAATGCTTCACA 1267
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1236 GAAATTTCTCTGGCCAGATGCTGCTGTTCCTCAAGTGTGTGCTCTTGAGAATGCTTCACA 1295
Query 1268 TGCTTCTCTTGCATCGGATTTTCAGAAATATAACCAAAAGATGAGGACACTGGTTTTCAA 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 TGCTTCTCTTGCATCGGATTTTCAGAAATATAACCAAAAGATGAGGACACTGGTTTTCAA 1355
Query 1328 TCTCAAGAACACTGCACTGCTGGCTAGACGACTGCTCAATGGCGAGTTAGAGCCTGCAAA 1387
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1356 TCTCAAGAACACTGCACTGCTGGCTAGACGACTGCTCAATGGCGAGTTAGAGCCTGCAAC 1415
Query 1388 GATTTTGAACATGTCACCCACTGAGTTAAAGGAGGGTCTAACTGCTGACGAAACAACAAA 1447
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1416 GATTTTGAACATGTCACCCACTGAGTTAAAGGAGGGTCTAACTGCTGACGAGACAACAAA 1475
Query 1448 GAAGGAGCCTGATGATGCGGATCGTATGCAGATGACTTCTGTAAGATGCTCGAGATGCAA 1507
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1476 GAAGGAGCCTGATGATGCTGATCGAATGCAGATGACTTCTGTAAGATGCTCGAGATGCAG 1535
Query 1508 TCAATTGAAGGTTGGCCTGAGAGATGTCATCCAAGCTGGGCATGGAGATCGCTATCAGCT 1567
|||||||| |||||||||||| ||| ||||||||||||||||||||||||| |||||| |
Sbjct 1536 TCAATTGACGGTTGGCCTGAGGGATATCATCCAAGCTGGGCATGGAGATCGATATCAGTT 1595
Query 1568 GGAGTGTGTTGACTGTGGCTATTCCTGGTATGCCTCAAGGGATGAGGTATCAACTCTGAC 1627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1596 GGAGTGTGTTGACTGTGGCTATTCCTGGTATGCCTCAAGGGATGAGGTATCAACTCTGAC 1655
Query 1628 AATAGTCACAGAAAAACCTGCCCAAGGCACAGAGAAGGAGGATATTGAGAAGAATTTGAC 1687
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1656 AATAGTCACAGATAAACCTGCCCAAGGCACAGAGAAGGAGGATATTGAGAAGAATTTGAC 1715
Query 1688 CAGTCCTCGTGAAACTGAGAAACCAAAAGACGAAGCCTTGAAGACCAATGACTCGAACGC 1747
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1716 CAGTCCTCGTGAAACTAATAAACCAAAAGACGAAGCCTTGAAGACCAATGACTCGAACGC 1775
Query 1748 TGACAACAATCCTGAAGCCTCCAAGAAACCAGAGTAAATGGTTTCCAACTTTT-AACC 1804
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1776 TGACAACAATCCTGAAGCCTCCAAGAAACCAGAGTAAAGGGTTTCCAACTTTTTAACC 1833
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89256569010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5