BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943016
Length=1135
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11580.1 | Symbols: | RNI-like superfamily protein | chr4:7... 614 7e-175
> AT4G11580.1 | Symbols: | RNI-like superfamily protein | chr4:7006648-7007738
REVERSE LENGTH=1002
Length=1002
Score = 614 bits (332), Expect = 7e-175
Identities = 479/547 (88%), Gaps = 21/547 (4%)
Strand=Plus/Plus
Query 581 GATGCCAAATATAGAGAAACTTGCTTTACCAATCTGGTGCTATCAAA-CAGAGAATTCAT 639
||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||
Sbjct 465 GATGCCAAATATAGAGAAACTTGCTTTACCAATCTGGTGCTATCAAAAC-GAGAAGTCAT 523
Query 640 TGCGGTTTGCTTTCAGTCAATGGAAGAATCTTAAAACACTGATCATCGCTCATGAACACT 699
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 524 TGCGGTTTGCATTCAGTCAATGGAAGAATCTTAAAACATTGATCATCGCTCATGAACACT 583
Query 700 CTTTCACCGGGATTTTCGACTTTAAAGCTGTGGGAGAGAGCTGTAGTAACCTAACCAACT 759
|||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 584 CTTTCAGCGGGAGATTCGACTTTAAAGCTGTGGGGGAGAGCTGTAGTAACCTAACCAACT 643
Query 760 TAAAATATTTAGGTCATTTGGAAGAATACAAGACCAGGGAAATCGTGCCTTACCTCCAGA 819
|||||||||| |||| |||||||||||||| | |||||||||| ||| |||||||||| |
Sbjct 644 TAAAATATTTGGGTCGTTTGGAAGAATACACGTCCAGGGAAATAGTGTCTTACCTCCATA 703
Query 820 GCCTCAAGAGGTTGAGTTTGCGATGCTCTTTGGTTAGTTATGA-AGCAGTTTACTG-TCT 877
||||||||||||||||||| ||||||| |||||| |||| | | |||||||||| | | |
Sbjct 704 GCCTCAAGAGGTTGAGTTTACGATGCTTTTTGGTCAGTTCT-ATAGCAGTTTACAGGTTT 762
Query 878 AATCATCGGCCTTCAAAACCTCACGATGCTTAATGTTTCACATTGCAAAAACTCGTAC-- 935
| ||| |||||||| |||||||||||| |||||||||||||||||||||||| ||||
Sbjct 763 A-TCACCGGCCTTCCAAACCTCACGATTCTTAATGTTTCACATTGCAAAAACCCGTATGA 821
Query 936 TTC----CATGCTATCA-CGAGATCTAGAGACGATTTTGTTATAAC-GACCGCCACTCAG 989
|| | | |||| | ||| ||||| |||| ||| ||||||||| | |||||||||||
Sbjct 822 TTATTTTCTTCCTAT-AGCGAAATCTATAGACAATTATGTTATAACAG-CCGCCACTCAG 879
Query 990 AAGCTTGA-AAATTTTATCTTATGTCCTCAGGATTGTAGGATTTGCAAAGATCATCAATG 1048
|||||||| |||||| ||| ||||||||| ||||||| |||||||||||||| | ||
Sbjct 880 AAGCTTGAGAAATTT-ATCACATGTCCTCACGATTGTATGATTTGCAAAGATCGT---TG 935
Query 1049 TTGCTACTCCTGGTCGTATCACGCTGAGGATTGGAGGAACGATGAGATAAAGGAACTTGC 1108
| ||||||| | ||| |||| |||||||| |||| |||| |||||||||||||||||||
Sbjct 936 TCGCTACTCATTGTCTTATCTCGCTGAGGTTTGGCGGAATGATGAGATAAAGGAACTTGA 995
Query 1109 TTTCTGA 1115
||||||
Sbjct 996 ATTCTGA 1002
Score = 568 bits (307), Expect = 6e-161
Identities = 420/472 (89%), Gaps = 17/472 (4%)
Strand=Plus/Plus
Query 24 GAC-AAGGTAGAAAG--CTT-AGGAGAAGTTTCAGGATGGGCAGATCTAAACAGAGACAT 79
||| ||||||||||| ||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 3 GACGAAGGTAGAAAGTACTTCAGGAGAAGTTTCAGAATGGGCAGATCTAAACAAAGACAT 62
Query 80 ACTTGAACTTATCTTCAATAAGCTCGAAGTGATGGACATTACCATGGGAGCTTCACGTGT 139
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 63 ACTTGAACTTATTTTCAATAAGCTCGACGTGATGGACATTACCATGGGAGCTTCACGTGT 122
Query 140 CTGCATCTCTTGGTTCCTTGCCTCTCACaaaaaaaCAT-TGTGGAACACGGTCGATCTTA 198
||||||||||||||||||||| |||||||| ||||| | |||||||||||||||| || |
Sbjct 123 CTGCATCTCTTGGTTCCTTGCTTCTCACAATAAAAC-TCTGTGGAACACGGTCGACCTCA 181
Query 199 CCAGTCTCCAAGAGTTAGATGTCTCCCGCAGTTTCAACTTTAAGGATGAAGAAAAACCAA 258
||| |||||||||||||||||||||||||| |||||||||||||||| |||||| |||||
Sbjct 182 CCAATCTCCAAGAGTTAGATGTCTCCCGCATTTTCAACTTTAAGGATAAAGAAAGACCAA 241
Query 259 TTTTCTTCTACAAGCACCGGGTTGACGACGATGAAGGCCTTACGAATCTTTTGACTAAGT 318
||||||| |||||||||| ||||||| | | | ||||||||||||||||||||||||
Sbjct 242 TTTTCTTTTACAAGCACCCGGTTGACCATAAACATGGCCTTACGAATCTTTTGACTAAGA 301
Query 319 TCATCTCTTGGTTCTTTCTTGACTTGTATGAAGTAGAAAGCGGGATTATCGGGATTAGTC 378
|||||||| |||||||||||||||| | |||||||||| || | || | | |||
Sbjct 302 TCATCTCTCGGTTCTTTCTTGACTTTTTTGAAGTAGAAGGCAGCAT-A-----A---GTC 352
Query 379 TCATGAATCTGTT-GATTGAGATCACCAAGTTGAGCCGCATGACCCCGAAGAATTTATTC 437
|||||||||| || | ||||||||| |||||||||||||||| |||| |||||||| |||
Sbjct 353 TCATGAATCTATTAG-TTGAGATCAGCAAGTTGAGCCGCATGGCCCCCAAGAATTTGTTC 411
Query 438 TTTAACTTTAATTCCTATATACAAGAAAATGGTCTCAAGTTTGCTGCTGAGA 489
|||||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 412 TTTAACTTCAATTCCTATATACAGGAAAATGGTCTCAAGTTCGCTGCTGAGA 463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55672404405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5