BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943017
Length=985
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11590.1 | Symbols: | F-box associated ubiquitination effec... 379 2e-104
> AT4G11590.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr4:7008603-7009796 FORWARD LENGTH=1194
Length=1194
Score = 379 bits (205), Expect = 2e-104
Identities = 353/421 (84%), Gaps = 24/421 (6%)
Strand=Plus/Plus
Query 255 TTGATAAGCCTTGGATATGGTCTAGAGAAATGCATAGCTAACCCTAGCACCGATACCTCC 314
|||||||||| |||||||||||||||||||| |||| ||||||||||||||| || |||
Sbjct 385 TTGATAAGCCATGGATATGGTCTAGAGAAATTCATAACTAACCCTAGCACCGGTAAATCC 444
Query 315 ACGGTTTTAGGTAGAGTCCAAACTAGTAGTACGAACGCACAAAGTTTTTTCGGGTACGAT 374
|| |||||||| ||||||||||| | ||||| | || ||| ||||||| ||||| |||
Sbjct 445 ACAGTTTTAGGGAGAGTCCAAACCAATAGTAAGGTTGCGCAATGTTTTTTGGGGTATGAT 504
Query 375 CAGGTTAATGATGAATACAAACTATTGGTAATGTACATGA-GCATGAA-TGGACC-TCCT 431
| |||||||||||||||||||||||||||| ||| ||||| | | || || | | || |
Sbjct 505 CCGGTTAATGATGAATACAAACTATTGGTATTGTGCATGAAGGAAAAAATGCAACGTCAT 564
Query 432 G--G-TCG---TCGAATAT--CATCTA--ATC--A---TCAAGTAGTCACATTGGGAGCT 476
| | ||| |||||||| || ||| ||| | ||||||| || ||||||||| |
Sbjct 565 GACGGTCGAACTCGAATATTACAACTATCATCTCAACATCAAGTATTCCCATTGGGAGTT 624
Query 477 AAAAACAAACCATGGAGAATGATTGATTATATAACTCCTCACCAACCTGTGTTTAACAGT 536
||||| ||||||||||||||||||||||||| |||||||||| |||||| | ||||||
Sbjct 625 AAAAAGAAACCATGGAGAATGATTGATTATACAACTCCTCACGGTCCTGTGCTGAACAGT 684
Query 537 GTATGCATAGATGGTGTTTTGTATTATGTTGCTTTTACGGGCGATA-AGTTT-TCACAAG 594
|| ||||||||||||||||| ||||||||||||||||||||||| | | ||| ||||| |
Sbjct 685 GTGTGCATAGATGGTGTTTTATATTATGTTGCTTTTACGGGCGA-AGA-TTTGTCACA-G 741
Query 595 -TGAGCTTAATGAGATTCAATTTGAGGTCTGAAAAGTTGGATATTTTTACTAGTTTATCC 653
||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 742 CTGAGCTTAATGAGATTCGATTTGGGGTCTGAAAAGTTGGATCTTTTTACTAGTTTACCC 801
Query 654 G 654
|
Sbjct 802 G 802
Score = 220 bits (119), Expect = 2e-56
Identities = 209/251 (83%), Gaps = 11/251 (4%)
Strand=Plus/Plus
Query 657 AAAGTAGCCTTAGCCACTAAAACTCCAAGTTATAAAT-TTGAACTGTGGATTTTGGATCA 715
|||||||||||||||||||||||| | |||| | ||||| ||||| ||||||||||
Sbjct 856 AAAGTAGCCTTAGCCACTAAAACT-TTATTTATTGGTATTGAAGTGTGGGTTTTGGATCA 914
Query 716 GCATGCCGAAGCACATGGATGGTTGAAGAAAAGTTTCAGTATCAATAGTTGGAAG-ATGT 774
||| |||||| |||||||||||||||||||||||||||||||| || || || | ||
Sbjct 915 GCAAGCCGAAATTCATGGATGGTTGAAGAAAAGTTTCAGTATCAA-AGGTGTTAGGAGGT 973
Query 775 TATTACGGTTGGATAATTTATTTATCAGGAG-CACTACTCATACAGGTGATTTTATTTTG 833
||| ||| | |||||||||||| || |||||||||||||||||| |||||||||
Sbjct 974 GGTTATT-TTG--TGATTTATTTATCAC-AGGCACTACTCATACAGGTGAGTTTATTTTG 1029
Query 834 GCACCACGGTACTATTCTAATAAATTTTATGTTATCCATTATAATCCGGACAC-AAATAG 892
|||||||||| ||||||||||| |||||||||||| |||| ||||| ||||| ||| ||
Sbjct 1030 GCACCACGGTTCTATTCTAATAGCTTTTATGTTATCTATTACAATCCCGACACGAAA-AG 1088
Query 893 TTTTAGAGAAA 903
||| ||| |||
Sbjct 1089 TTTAAGAAAAA 1099
Score = 185 bits (100), Expect = 6e-46
Identities = 142/162 (88%), Gaps = 3/162 (2%)
Strand=Plus/Plus
Query 1 GTCAATCCAAGAAGAGT-AA--AATGGAGAACAATTCTCAGTCTCTTGAAATCTCAAAAG 57
|||||| |||||||||| || ||| |||||||||||||||||||||||||||| |||||
Sbjct 11 GTCAATTCAAGAAGAGTAAATTAATAGAGAACAATTCTCAGTCTCTTGAAATCTTAAAAG 70
Query 58 AGAATCACTTCGCTGATGTTCGTTTGGACCTAATGATCGAGATATGTATGAGATTTCCTG 117
|||| ||||| |||||||| ||||||| || || ||||||| ||||||||| ||||
Sbjct 71 AGAAGAACTTCAATGATGTTCCTTTGGACGTAGCCATAGAGATATTTATGAGATTGCCTG 130
Query 118 TGAAATCAGTAGCTAGGTTTCTCCTTCTCTCAAAGTTTTGGG 159
||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 131 TGAAATCCGTAGCTAGGTTTCTCCTACTCTCAAAGTTTTGGG 172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48224781120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5