BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943017 Length=985 Score E Sequences producing significant alignments: (Bits) Value AT4G11590.1 | Symbols: | F-box associated ubiquitination effec... 379 2e-104 > AT4G11590.1 | Symbols: | F-box associated ubiquitination effector family protein | chr4:7008603-7009796 FORWARD LENGTH=1194 Length=1194 Score = 379 bits (205), Expect = 2e-104 Identities = 353/421 (84%), Gaps = 24/421 (6%) Strand=Plus/Plus Query 255 TTGATAAGCCTTGGATATGGTCTAGAGAAATGCATAGCTAACCCTAGCACCGATACCTCC 314 |||||||||| |||||||||||||||||||| |||| ||||||||||||||| || ||| Sbjct 385 TTGATAAGCCATGGATATGGTCTAGAGAAATTCATAACTAACCCTAGCACCGGTAAATCC 444 Query 315 ACGGTTTTAGGTAGAGTCCAAACTAGTAGTACGAACGCACAAAGTTTTTTCGGGTACGAT 374 || |||||||| ||||||||||| | ||||| | || ||| ||||||| ||||| ||| Sbjct 445 ACAGTTTTAGGGAGAGTCCAAACCAATAGTAAGGTTGCGCAATGTTTTTTGGGGTATGAT 504 Query 375 CAGGTTAATGATGAATACAAACTATTGGTAATGTACATGA-GCATGAA-TGGACC-TCCT 431 | |||||||||||||||||||||||||||| ||| ||||| | | || || | | || | Sbjct 505 CCGGTTAATGATGAATACAAACTATTGGTATTGTGCATGAAGGAAAAAATGCAACGTCAT 564 Query 432 G--G-TCG---TCGAATAT--CATCTA--ATC--A---TCAAGTAGTCACATTGGGAGCT 476 | | ||| |||||||| || ||| ||| | ||||||| || ||||||||| | Sbjct 565 GACGGTCGAACTCGAATATTACAACTATCATCTCAACATCAAGTATTCCCATTGGGAGTT 624 Query 477 AAAAACAAACCATGGAGAATGATTGATTATATAACTCCTCACCAACCTGTGTTTAACAGT 536 ||||| ||||||||||||||||||||||||| |||||||||| |||||| | |||||| Sbjct 625 AAAAAGAAACCATGGAGAATGATTGATTATACAACTCCTCACGGTCCTGTGCTGAACAGT 684 Query 537 GTATGCATAGATGGTGTTTTGTATTATGTTGCTTTTACGGGCGATA-AGTTT-TCACAAG 594 || ||||||||||||||||| ||||||||||||||||||||||| | | ||| ||||| | Sbjct 685 GTGTGCATAGATGGTGTTTTATATTATGTTGCTTTTACGGGCGA-AGA-TTTGTCACA-G 741 Query 595 -TGAGCTTAATGAGATTCAATTTGAGGTCTGAAAAGTTGGATATTTTTACTAGTTTATCC 653 ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| || Sbjct 742 CTGAGCTTAATGAGATTCGATTTGGGGTCTGAAAAGTTGGATCTTTTTACTAGTTTACCC 801 Query 654 G 654 | Sbjct 802 G 802 Score = 220 bits (119), Expect = 2e-56 Identities = 209/251 (83%), Gaps = 11/251 (4%) Strand=Plus/Plus Query 657 AAAGTAGCCTTAGCCACTAAAACTCCAAGTTATAAAT-TTGAACTGTGGATTTTGGATCA 715 |||||||||||||||||||||||| | |||| | ||||| ||||| |||||||||| Sbjct 856 AAAGTAGCCTTAGCCACTAAAACT-TTATTTATTGGTATTGAAGTGTGGGTTTTGGATCA 914 Query 716 GCATGCCGAAGCACATGGATGGTTGAAGAAAAGTTTCAGTATCAATAGTTGGAAG-ATGT 774 ||| |||||| |||||||||||||||||||||||||||||||| || || || | || Sbjct 915 GCAAGCCGAAATTCATGGATGGTTGAAGAAAAGTTTCAGTATCAA-AGGTGTTAGGAGGT 973 Query 775 TATTACGGTTGGATAATTTATTTATCAGGAG-CACTACTCATACAGGTGATTTTATTTTG 833 ||| ||| | |||||||||||| || |||||||||||||||||| ||||||||| Sbjct 974 GGTTATT-TTG--TGATTTATTTATCAC-AGGCACTACTCATACAGGTGAGTTTATTTTG 1029 Query 834 GCACCACGGTACTATTCTAATAAATTTTATGTTATCCATTATAATCCGGACAC-AAATAG 892 |||||||||| ||||||||||| |||||||||||| |||| ||||| ||||| ||| || Sbjct 1030 GCACCACGGTTCTATTCTAATAGCTTTTATGTTATCTATTACAATCCCGACACGAAA-AG 1088 Query 893 TTTTAGAGAAA 903 ||| ||| ||| Sbjct 1089 TTTAAGAAAAA 1099 Score = 185 bits (100), Expect = 6e-46 Identities = 142/162 (88%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 1 GTCAATCCAAGAAGAGT-AA--AATGGAGAACAATTCTCAGTCTCTTGAAATCTCAAAAG 57 |||||| |||||||||| || ||| |||||||||||||||||||||||||||| ||||| Sbjct 11 GTCAATTCAAGAAGAGTAAATTAATAGAGAACAATTCTCAGTCTCTTGAAATCTTAAAAG 70 Query 58 AGAATCACTTCGCTGATGTTCGTTTGGACCTAATGATCGAGATATGTATGAGATTTCCTG 117 |||| ||||| |||||||| ||||||| || || ||||||| ||||||||| |||| Sbjct 71 AGAAGAACTTCAATGATGTTCCTTTGGACGTAGCCATAGAGATATTTATGAGATTGCCTG 130 Query 118 TGAAATCAGTAGCTAGGTTTCTCCTTCTCTCAAAGTTTTGGG 159 ||||||| ||||||||||||||||| |||||||||||||||| Sbjct 131 TGAAATCCGTAGCTAGGTTTCTCCTACTCTCAAAGTTTTGGG 172 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48224781120 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5