BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943018
Length=763
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11580.1 | Symbols: | RNI-like superfamily protein | chr4:7... 516 1e-145
> AT4G11580.1 | Symbols: | RNI-like superfamily protein | chr4:7006648-7007738
REVERSE LENGTH=1002
Length=1002
Score = 516 bits (279), Expect = 1e-145
Identities = 391/444 (88%), Gaps = 12/444 (3%)
Strand=Plus/Plus
Query 38 CTT-AGGAGAAGTTTCAAAATGGGCAGATGTAAACAGAGACATTCTTGAACTTATCTTCA 96
||| ||||||||||||| ||||||||||| |||||| |||||| ||||||||||| ||||
Sbjct 20 CTTCAGGAGAAGTTTCAGAATGGGCAGATCTAAACAAAGACATACTTGAACTTATTTTCA 79
Query 97 ATAAGCTCGACTTGATGGACATTACCATGGGAGCTTCACGTGTATGCATCTCTTGGTTCC 156
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 80 ATAAGCTCGACGTGATGGACATTACCATGGGAGCTTCACGTGTCTGCATCTCTTGGTTCC 139
Query 157 TTGCCTCTAACAA-AAGTACTTTGTGGAACACGGTCGACCTCACCAAGCTTCAAGAATTA 215
|||| ||| |||| || ||| ||||||||||||||||||||||||| || ||||| |||
Sbjct 140 TTGCTTCTCACAATAAA-ACTCTGTGGAACACGGTCGACCTCACCAATCTCCAAGAGTTA 198
Query 216 GATATCTCCAACAGTTTTGT-CTTTAAG-AGTAAAGTACGACCAATCTTCTATTACAAGC 273
||| ||||| || |||| ||||||| | ||||| | ||||||| |||| ||||||||
Sbjct 199 GATGTCTCCCGCA-TTTTCAACTTTAAGGA-TAAAGAAAGACCAATTTTCTTTTACAAGC 256
Query 274 ACCCGGTTGACGACGATGAAGGCCTTTCTAATAATCTTTTGACTAAGATCATCTCCCGGT 333
||||||||||| | | | |||||| | ||| |||||||||||||||||||| ||||
Sbjct 257 ACCCGGTTGACCATAAACATGGCCTTACGAAT---CTTTTGACTAAGATCATCTCTCGGT 313
Query 334 TCTTTCATGACTATTTTGAAGTACAAGGCGGCATAAGTCTCATGAATCTATT-GATTGAG 392
|||||| ||||| |||||||||| ||||| |||||||||||||||||||||| | |||||
Sbjct 314 TCTTTCTTGACTTTTTTGAAGTAGAAGGCAGCATAAGTCTCATGAATCTATTAG-TTGAG 372
Query 393 ATCAGCAAGTTGAGCTGCATGACCCCGAAGAATTTGTTCTTTAACTTCAATTCCTATTTA 452
||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||| ||
Sbjct 373 ATCAGCAAGTTGAGCCGCATGGCCCCCAAGAATTTGTTCTTTAACTTCAATTCCTATATA 432
Query 453 CAAGAAAATGGTCTCAAGTTCGCT 476
|| |||||||||||||||||||||
Sbjct 433 CAGGAAAATGGTCTCAAGTTCGCT 456
Score = 292 bits (158), Expect = 3e-78
Identities = 224/256 (88%), Gaps = 4/256 (2%)
Strand=Plus/Plus
Query 477 AATCTTAAAACACTGATCATCGCTCATGAACCCTCTTTCACCGGGACATTTGAGTTTCAG 536
|||||||||||| |||||||||||||||||| |||||||| ||||| ||| || ||| |
Sbjct 550 AATCTTAAAACATTGATCATCGCTCATGAACACTCTTTCAGCGGGAGATTCGACTTTAAA 609
Query 537 GCTGTGGGAGAGAGTTGTAGTAACCTAACCAACTTAAAATATTTGGGTCATTTGGAAGAT 596
|||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 610 GCTGTGGGGGAGAGCTGTAGTAACCTAACCAACTTAAAATATTTGGGTCGTTTGGAAGAA 669
Query 597 TACAAGGCCATTGAAATGGTG-CGTTACCTCCATAGCCTCAAGAGGTTGAGTTTACGGTG 655
|||| | ||| ||||| ||| | ||||||||||||||||||||||||||||||||| ||
Sbjct 670 TACACGTCCAGGGAAATAGTGTC-TTACCTCCATAGCCTCAAGAGGTTGAGTTTACGATG 728
Query 656 CTCTTTGGTTAGTAACC-TAGCAGTTTACCGCTTAATCATCGGCCTTCGAAACCTCACGA 714
|| |||||| ||| | ||||||||||| | || |||| |||||||| |||||||||||
Sbjct 729 CTTTTTGGTCAGTT-CTATAGCAGTTTACAGGTTTATCACCGGCCTTCCAAACCTCACGA 787
Query 715 TTCTTAATGTTTTACA 730
|||||||||||| |||
Sbjct 788 TTCTTAATGTTTCACA 803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37072800486
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5