BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943019

Length=247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G09560.2 | Symbols:  | Lipin family protein | chr3:2934617-2...   241    3e-63


> AT3G09560.2 | Symbols:  | Lipin family protein | chr3:2934617-2939456 
REVERSE LENGTH=3465
Length=3465

 Score =  241 bits (130),  Expect = 3e-63
 Identities = 151/161 (94%), Gaps = 2/161 (1%)
 Strand=Plus/Plus

Query  63    GAGAATGGATATCAGTTGCTGTTTCTGAGCGCTCGTGCCATCGTTCAGGCATATCTAACG  122
             ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| 
Sbjct  2641  GAGAATGGATATCAGTTACTGTTTTTGAGCGCTCGTGCCATCGTTCAGGCATATCTAACA  2700

Query  123   AGAAGTTTCTTAAATAATCTGAAGCAGGACGGAAAAGCTCTACCAAATGG-CCATGTGGT  181
             |||| |||||||||||||||||||||||||||||||||||| ||||  || || ||||||
Sbjct  2701  AGAAATTTCTTAAATAATCTGAAGCAGGACGGAAAAGCTCTGCCAACCGGTCC-TGTGGT  2759

Query  182   CATTTCACCAGATGGCCTATTTCTAGCATTGTACCGTGAAG  222
             ||||||||||||||||||||||| |||||||||||||||||
Sbjct  2760  CATTTCACCAGATGGCCTATTTCCAGCATTGTACCGTGAAG  2800



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11209708027


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5