BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943024

Length=613
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G11650.1 | Symbols: ATOSM34, OSM34 | osmotin 34 | chr4:70248...   451    3e-126
  AT4G11642.1 | Symbols:  | pseudogene of ATOSM34 (osmotin-like p...   281    4e-75 


> AT4G11650.1 | Symbols: ATOSM34, OSM34 | osmotin 34 | chr4:7024856-7026146 
REVERSE LENGTH=1039
Length=1039

 Score =  451 bits (244),  Expect = 3e-126
 Identities = 332/374 (89%), Gaps = 7/374 (2%)
 Strand=Plus/Plus

Query  51   TTCATA--TTCCCCATCATTTTCCTCATCTCCACCGCGACGGCTGCCACATTCGATATCC  108
            ||||||  |||| || | |||| |||||||||||||| || || ||||||||||| ||||
Sbjct  58   TTCATATTTTCCGCA-C-TTTTGCTCATCTCCACCGCAACAGCCGCCACATTCGAAATCC  115

Query  109  TTAACCGATGTAGCTACACCGTGTGGGCCGCCGCTAGCCCCGGAGGTGGCCGTCGTCTAA  168
            | |||| |||||| |||||||||||||| ||||| ||||| ||||||||||| |||||| 
Sbjct  116  TAAACCAATGTAGTTACACCGTGTGGGCTGCCGCAAGCCCTGGAGGTGGCCGACGTCTAG  175

Query  169  ATCCCGGCCAGTCATGGAGGCTAGATGTCGCTGCCGGG-ACAAAAATGGCACGTATTTGG  227
            || | ||||| |||||||||||||||||||| | |||| || ||||||||||| ||||||
Sbjct  176  ATGCTGGCCAATCATGGAGGCTAGATGTCGC-GGCGGGCACTAAAATGGCACGGATTTGG  234

Query  228  GGTCGGACCAACTGTAACTTTGACTCCTCGGGCCGTGGCCGATGCGAAACCGGTGACTGC  287
            ||| ||||||| ||||||||||||||||| || |||||||||||| |||| |||||||||
Sbjct  235  GGTAGGACCAATTGTAACTTTGACTCCTCAGGTCGTGGCCGATGCCAAACTGGTGACTGC  294

Query  288  AGTGGTGGACTTCAATGTACTGGTTGGGGCCAGCCTCCAAACACGTTGGCTGAGTACGCT  347
            ||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct  295  AGTGGTGGACTCCAATGTACTGGCTGGGGACAGCCACCAAACACGTTGGCTGAGTACGCT  354

Query  348  TTGAACCAATACAATAACTTAGACTTCTACGACATCTCACTTGTCGATGGATTTAACATT  407
            |||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct  355  TTGAACCAATTCAACAACTTAGACTTCTACGATATCTCACTTGTCGATGGATTTAACATA  414

Query  408  CCAATG-AGTTTAG  420
            || ||| |||||||
Sbjct  415  CCTATGGAGTTTAG  428


> AT4G11642.1 | Symbols:  | pseudogene of ATOSM34 (osmotin-like 
protein) | chr4:7023453-7023806 REVERSE LENGTH=354
Length=354

 Score =  281 bits (152),  Expect = 4e-75
 Identities = 182/196 (93%), Gaps = 3/196 (2%)
 Strand=Plus/Plus

Query  420  GTTTATAAGACGAACCAGTACTGCTGTACAAACGGGCAAGGTTCATGTAGCAGCACTGGG  479
            ||||||| | | ||||||||||| | ||| ||||| ||||||||||||||||||||||||
Sbjct  145  GTTTATAGGTCAAACCAGTACTGTTATACGAACGGACAAGGTTCATGTAGCAGCACTGGG  204

Query  480  TTCTCAAGATTCTTCAAACAGAGGTGTCCCGACGCCTACAGCTATCCACAAGACGACCCG  539
            |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
Sbjct  205  TTCTCAAGATTCTTCAAACATAGGTGTCCCGACGCCTACAACTATCCACAAGACGACC-G  263

Query  540  A-CAAGCACTTTCACTTGTAGTTCCACTAA-CTACAGGGTCGTGTTTTGTCCTTAGGCGC  597
            | |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct  264  AACAAGCACTTTCACTTGTAGTTCCACTAAACTACAGGGTCGTGTTTCGTCCTTAGGCGC  323

Query  598  TAAGCTCGGTGCTACG  613
            |||||| |||||||||
Sbjct  324  TAAGCTAGGTGCTACG  339



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29537678436


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5