BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943027
Length=714
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11650.1 | Symbols: ATOSM34, OSM34 | osmotin 34 | chr4:70248... 791 0.0
AT4G11642.1 | Symbols: | pseudogene of ATOSM34 (osmotin-like p... 361 6e-99
> AT4G11650.1 | Symbols: ATOSM34, OSM34 | osmotin 34 | chr4:7024856-7026146
REVERSE LENGTH=1039
Length=1039
Score = 791 bits (428), Expect = 0.0
Identities = 613/703 (87%), Gaps = 10/703 (1%)
Strand=Plus/Plus
Query 15 AAC-AAAAAATGGCAAACATCTCACACTCTACGTTCATGTTCTCCATCA-TTTTCCTCAT 72
||| |||||||||||||| ||| |||||| ||||| || ||| || |||| |||||
Sbjct 25 AACTAAAAAATGGCAAACCTCTTGGTCTCTACTTTCATATTTTCC-GCACTTTTGCTCAT 83
Query 73 CTCAACCGCGACGGCTGCCACATTCGACATCCTAAACCGATGTAGTTACACCGTGTGGGC 132
||| ||||| || || ||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 84 CTCCACCGCAACAGCCGCCACATTCGAAATCCTAAACCAATGTAGTTACACCGTGTGGGC 143
Query 133 TGCCGCAAGCCCCGGAGGTGGCCGGCGTCTTGATGCGGGCCAGTCATGGAGGCTAGACGT 192
|||||||||||| ||||||||||| ||||| ||||| ||||| |||||||||||||| ||
Sbjct 144 TGCCGCAAGCCCTGGAGGTGGCCGACGTCTAGATGCTGGCCAATCATGGAGGCTAGATGT 203
Query 193 CGCAGCCGGTACTAAAATGGCACGGATTTGGGGTCGGACCAACTGTAACTTTGACCCCTC 252
||| || || |||||||||||||||||||||||| ||||||| |||||||||||| ||||
Sbjct 204 CGCGGCGGGCACTAAAATGGCACGGATTTGGGGTAGGACCAATTGTAACTTTGACTCCTC 263
Query 253 GGGACGTGGCCGATGCCAAACTGGTGACTGCAGTGGTGGACTTCAATGTACTGGTTGGGG 312
|| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 264 AGGTCGTGGCCGATGCCAAACTGGTGACTGCAGTGGTGGACTCCAATGTACTGGCTGGGG 323
Query 313 ACAGCCACCAAACACGTTGGCTGAGTATGCTTTGAACCAGTTCAACAACTTAGACTTCTA 372
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 324 ACAGCCACCAAACACGTTGGCTGAGTACGCTTTGAACCAATTCAACAACTTAGACTTCTA 383
Query 373 CGACATCTCACTTGTCGATGGATTTAACATTCCTATGGAGTTTAGCCCAACAAGCTCGAA 432
||| |||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 384 CGATATCTCACTTGTCGATGGATTTAACATACCTATGGAGTTTAGCCCAACTAGTTCGAA 443
Query 433 CTGCCACCGGAT-CGTATGCAACGCGGACATAAATGGACAGTGTCCGAATGAGTTGAAAG 491
|||||| ||||| | |||| | ||| |||||||| ||||| ||||| || | ||||| ||
Sbjct 444 CTGCCATCGGATAC-TATGTACCGCAGACATAAACGGACAATGTCCAAACGTGTTGAGAG 502
Query 492 CCCCGGGTGGTTGCAACAACCCGTGCACGGTTTTTAAGACGAATGAGTATTGTTGTACGA 551
|||| ||||| |||||||||||||| || || ||| ||||||| | || ||||||||||
Sbjct 503 CCCCAGGTGGATGCAACAACCCGTGTACTGTATTTCAGACGAACCAATACTGTTGTACGA 562
Query 552 ACGGGCAAGGTTCATGTAGC-AGCACTGGGTTCTCAAGATTCTTCAAACAGAGGTGTCCC 610
|||| || || ||||||||| | |||| || |||||||||||| || ||||| || |||
Sbjct 563 ACGGTCAGGGATCATGTAGCGAT-ACTGAGTACTCAAGATTCTTTAAGCAGAGATG-CCC 620
Query 611 -GACGCCTACAGCTATCCACAAGACGACCCGACCAGCACTTTCACTTGTAGTTCCACTAA 669
||||| ||||||||||||||||| |||||||| |||||||||||||| | ||||||
Sbjct 621 TGACGCTTACAGCTATCCACAAGATGACCCGACTAGCACTTTCACTTGCACCAACACTAA 680
Query 670 CTACAGGGTGGTGTTTTGTCCTTAGGGCTAAGCTCGATGCTAC 712
||||||||| ||||||||||| ||| ||| ||||| ||||||
Sbjct 681 CTACAGGGTCGTGTTTTGTCCA-AGGTCTAGGCTCGGTGCTAC 722
> AT4G11642.1 | Symbols: | pseudogene of ATOSM34 (osmotin-like
protein) | chr4:7023453-7023806 REVERSE LENGTH=354
Length=354
Score = 361 bits (195), Expect = 6e-99
Identities = 268/303 (88%), Gaps = 6/303 (2%)
Strand=Plus/Plus
Query 416 AGCCCAACAAGCTCGAACTGCCACCGGATCGTATGCAACGCGGACATA-AATGGACAGTG 474
||||| ||||||||||| ||||||||||| ||||||| || |||||| || ||||||||
Sbjct 40 AGCCCGACAAGCTCGAATTGCCACCGGATAATATGCAATGCAGACATAGAA-GGACAGTG 98
Query 475 TCCGAATGAGTTGAAAGCCCCGGGTGGTTGCAACAACCCGTGCACGGTTTTTAAGACGAA 534
||| || || |||| ||||| ||| ||||||||||||||||| ||||||| || | | ||
Sbjct 99 TCCAAACGACTTGAGAGCCCTGGGCGGTTGCAACAACCCGTGTACGGTTTATAGGTCAAA 158
Query 535 TGAGTATTGTTGTACGAACGGGCAAGGTTCATGTAGCAGCACTGGGTTCTCAAGATTCTT 594
|||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 159 CCAGTACTGTTATACGAACGGACAAGGTTCATGTAGCAGCACTGGGTTCTCAAGATTCTT 218
Query 595 CAAACAGAGGTGTCCCGACGCCTACAGCTATCCACAAGACGACCCGACCA-GCACTTTCA 653
|||||| ||||||||||||||||||| ||||||||||||||||| || || |||||||||
Sbjct 219 CAAACATAGGTGTCCCGACGCCTACAACTATCCACAAGACGACC-GAACAAGCACTTTCA 277
Query 654 CTTGTAGTTCCACTAA-CTACAGGGTGGTGTTTTGTCCTTAGG-GCTAAGCTCGATGCTA 711
|||||||||||||||| ||||||||| |||||| ||||||||| |||||||| | |||||
Sbjct 278 CTTGTAGTTCCACTAAACTACAGGGTCGTGTTTCGTCCTTAGGCGCTAAGCTAGGTGCTA 337
Query 712 CGG 714
|||
Sbjct 338 CGG 340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34611327283
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5