BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943031
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11660.1 | Symbols: AT-HSFB2B, HSFB2B | winged-helix DNA-bin... 1823 0.0
AT5G62020.1 | Symbols: AT-HSFB2A, HSFB2A | heat shock transcrip... 165 9e-40
> AT4G11660.1 | Symbols: AT-HSFB2B, HSFB2B | winged-helix DNA-binding
transcription factor family protein | chr4:7042630-7044708
FORWARD LENGTH=1991
Length=1991
Score = 1823 bits (987), Expect = 0.0
Identities = 1112/1172 (95%), Gaps = 9/1172 (1%)
Strand=Plus/Plus
Query 13 GATCTAAAACTCATGCCGGGGGAACAAACCGGAGAAACTCCGACGGTGGCCGGAGTTGGA 72
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 GATCTATAACTCATGCCGGGGGAACAAACCGGAGAAACTCCGACGGTGGCCGGAGTTGGC 424
Query 73 GGCGGTGGAGCTGGTTGTAGCGCCGGGAATagtggtggaagtagtggatgtggtgctggc 132
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 GGCGGTGGAGCTGGTTGTAGCGCCGGGAATAGTGGTGGAAGTAGTGGATGTGGTGCTGGT 484
Query 133 ggcggcggtggtggtagtggtggaggtggcggaggaggaggagATTCGCAGAGGTCAATT 192
|| |||||||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 485 GGTGGCGGTGGTGGTAGTGGTGGAGGTGGTGGCGGAGGAGGAGATTCACAGAGGTCAATT 544
Query 193 CCGACGCCGTTTTTGACGAAAACGTATCAGCTTGTGGAAGATCCGGTTTACGACGAATTG 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 CCGACGCCGTTTTTGACGAAAACGTATCAGCTTGTGGAAGATCCGGTTTACGACGAATTG 604
Query 253 ATATCGTGGAACGAAGATGGAACAACTTTTATTGTGTGGCGACCAGCTGAATTCGCCAGA 312
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 605 ATCTCGTGGAACGAAGATGGAACCACTTTTATTGTGTGGCGACCAGCTGAATTCGCTAGA 664
Query 313 GATCTTCTTCCCAAATACTTCAAACACAACAATTTCTCTAGTTTTGTTCGTCAGCTCAAT 372
|||||||||||||||||||||||||| || || ||||| |||||||||||||||||||||
Sbjct 665 GATCTTCTTCCCAAATACTTCAAACATAATAACTTCTCGAGTTTTGTTCGTCAGCTCAAT 724
Query 373 ACTTACGGATTTCGAAAAGTAGTTCCAGATCGTTGGGAGTTTTCTAATGACTGTTTTAAG 432
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 725 ACTTACGGATTTCGAAAAGTAGTTCCAGATCGTTGGGAGTTTTCTAATGATTGTTTTAAG 784
Query 433 AGAGGTGAGAAGATTCTGCTTCGGGATATTCAACGGCGGAAAATCTCTCAGCCTGCTATG 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 AGAGGTGAGAAGATTCTGCTTCGGGATATTCAACGGCGGAAAATCTCTCAGCCTGCTATG 844
Query 493 GCCGCGGCCGCTGCAGCGGCGGCGGCAGCAGTAGTGGCTTCGGCTGTTACGGTGGCAGCG 552
|||||||| |||||||||||||||||||| |||| ||||||||||||||| || |||||
Sbjct 845 GCCGCGGCTGCTGCAGCGGCGGCGGCAGCCGTAGCGGCTTCGGCTGTTACAGTAGCAGCT 904
Query 553 GTTCCTGTTGTAGCTCACGCTGTTTCTCCGTCGAACTCTGGAGAAGAACAGGTTATATCA 612
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 905 GTTCCTGTTGTAGCTCATATTGTTTCTCCATCGAACTCTGGAGAAGAACAGGTTATATCG 964
Query 613 TCTAATTCTTCGCCTGCGGCTGCAGCCGCTGCTATAGGAGGAGTGGTTGGTGGT--T-CT 669
||||||||||||||||||||||| || ||||||||||||||||||||||||||| | ||
Sbjct 965 TCTAATTCTTCGCCTGCGGCTGCTGCTGCTGCTATAGGAGGAGTGGTTGGTGGTGGTTCT 1024
Query 670 TTGCAGAGGACAACGAGCTGCACCACTGCACCAGAGCTGGTTGAGGAGAATGAGCGGTTG 729
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1025 TTGCAGAGGACAACGAGCTGCACCACTGCACCAGAGCTGGTTGAGGAGAATGAGCGATTG 1084
Query 730 AGGAAAGATAATGAGCGATTGAGGAGAGAGTTGACAAAGTTTAAAGGATTATATGCGAAT 789
||||||||||||||||||||||||| |||| |||||||| |||||||||| |||||||||
Sbjct 1085 AGGAAAGATAATGAGCGATTGAGGAAAGAGATGACAAAGCTTAAAGGATTGTATGCGAAT 1144
Query 790 ATCTACACATTAATGGCGAATTTCACACCGGGTCGAGAAGATTGTGCGCATTTGTTAGCA 849
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1145 ATCTACACATTAATGGCGAATTTCACACCGGGTCAAGAAGATTGTGCGCATTTGTTACCT 1204
Query 850 GAAGGGAAACCTTTAGATCTTTTACCGGAGAGACAAGATATGAGTGAAGCCATGGCAATG 909
|||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct 1205 GAAGGGAAACCTTTAGATCTTTTACCGGAGAGACAAGAGATGAGTGAAGCCATT--A-TG 1261
Query 910 GCTTCTAGAA-TAGAGACAGGGATTGGTTTGAAACTTGATGAGGATTTGACTCCGAGGTT 968
|||||| ||| ||||||||||||||||| ||||||||| ||||||||||||||| |||||
Sbjct 1262 GCTTCT-GAAATAGAGACAGGGATTGGTCTGAAACTTGGTGAGGATTTGACTCCAAGGTT 1320
Query 969 GTTTGGGGTTTCTATTGGGGTTAAGCGAGCTAGGAGAGAAGAAGAATTGGGTGCTGCAGG 1028
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1321 GTTTGGGGTTTCTATTGGGGTCAAGCGAGCTAGAAGAGAAGAAGAATTGGGTGCTGCAGA 1380
Query 1029 GGAAGAGGATGATGATAGACGAGAAGCGGTTGCCCAAGAGGGAGAACAAAGTTCTGATGT 1088
|||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1381 GGAAGAAGATGATGATAGACGAGAAGCTGCTGCCCAAGAGGGAGAACAAAGTTCTGATGT 1440
Query 1089 TAAGGCAGAGCCCATGGAGGAGAATAACTCCGCTAACCATAATGGGTCGTGGCTTGAACT 1148
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1441 TAAGGCAGAGCCAATGGAGGAGAATAACTCCGGTAACCATAATGGGTCGTGGCTTGAACT 1500
Query 1149 CGGAAAATGAAAA-CACTTACCGGTTCAGAGG 1179
||||||||||||| ||||| ||| ||||||||
Sbjct 1501 CGGAAAATGAAAAACACTTGCCGATTCAGAGG 1532
> AT5G62020.1 | Symbols: AT-HSFB2A, HSFB2A | heat shock transcription
factor B2A | chr5:24916089-24917643 FORWARD LENGTH=1472
Length=1472
Score = 165 bits (89), Expect = 9e-40
Identities = 226/290 (78%), Gaps = 18/290 (6%)
Strand=Plus/Plus
Query 196 ACGCCGTTTTTGACGAAAACGTATCAGCTTGTGGAAGATCCGGTT-TA-CGACGAAT-TG 252
||||||||| | || ||||||| | | || || |||||| ||| | ||||| || |
Sbjct 187 ACGCCGTTTCTCACAAAAACGTTTAACCTCGTTGAAGAT--AGTTCCATCGACG-ATGTT 243
Query 253 ATATCGTGGAACGAAGATGGAACAACTTTTATTGTGTGGCGA-CCAG-CTGAATTCGCCA 310
|| || |||||||||||||| | |||| || || ||| | || | | || ||||| |
Sbjct 244 ATCTCATGGAACGAAGATGGTTCCTCTTTCATCGTATGG-AATCC-GACAGATTTCGCTA 301
Query 311 GAGATCTT-CTTCCCAAATACTTCAAACACAACAATTTCTCTAGTTTTGTTCGTCAGCTC 369
|||| || ||||| ||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 302 AAGAT-TTGCTTCCTAAACACTTCAAACACAACAATTTCTCTAGTTTCGTTCGTCAGCTC 360
Query 370 AATACTTACGGATTTCGAAAA-GTAGTTCCAGATCGTTGGGAGTTTTCTAATGACTGT-T 427
|| ||||||||||| | |||| || || || ||||| ||||||||||| || || | | |
Sbjct 361 AACACTTACGGATT-CAAAAAAGTTGTACCGGATCGATGGGAGTTTTCAAACGATT-TCT 418
Query 428 TTAAGAGAGGTGAGAAGAT-TCTGCTTCGGGATATTCAACGGCGGAAAAT 476
|||||||||| || || | ||| || || || || ||||| ||||||||
Sbjct 419 TTAAGAGAGGAGAAAA-ACGTCTTCTCCGTGAGATCCAACGTCGGAAAAT 467
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57881228385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5