BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943036
Length=1768
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11690.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 2475 0.0
> AT4G11690.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr4:7056254-7057954 FORWARD LENGTH=1701
Length=1701
Score = 2475 bits (1340), Expect = 0.0
Identities = 1592/1712 (93%), Gaps = 24/1712 (1%)
Strand=Plus/Plus
Query 21 ATGGCGGCAAAATCCCAGAAAACCCTCATTCTACTAGCAAATCTAATCAAGGTTCCTCCA 80
||||||||||||||||||||||||||| |||| ||||| ||| |||||||| ||||||||
Sbjct 1 ATGGCGGCAAAATCCCAGAAAACCCTCGTTCTGCTAGCGAATTTAATCAAGTTTCCTCCA 60
Query 81 TTAAAAGCTTTCTCTCTCTTAAATTCTCCAAATTTCCATGGATTTCAACACACACACGAA 140
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 TTAAAAGCTTTTTCTCTCTTAAATTCTCCAAATTTCCATGAATTTCAACACACACACGAA 120
Query 141 TCCATATCAATCCTTCTTCGTCTCCTTCTCTCTGGAAACTTATACTCTCACGCTCAATCA 200
|| || ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 121 TCAATCTCAATCCTTCTTCGTCTCCTTCTCTCTGGGAACTTATTCTCTCACGCTCAATCA 180
Query 201 CTTCTCCTTCAAGTAATCTCCGGAAAAATCCAATCCCAATTCTTCACATCTTCCTCTCTG 260
||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 CTTCTTCTACAAGTAATCTCCGGAAAAATCCACTCCCAATTCTTCACATCTTCCTCTCTG 240
Query 261 CTACACTATTTGACAGAATCAGAAACGTCAAAAACCAAGTCTCGTCTCTACGAGGTAATC 320
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 241 TTACACTATTTGACAGAATCAGAAACGTCAAAAACAAAGTTTCGTCTCTACGAGGTAATC 300
Query 321 ATCAATGCCTATGTTCAATCTCAATCCCTAGA-TTCATCAATCTATTACTTCAACGAAAT 379
|||||| ||||||||||||||||||||||| | || |||||||| |||||||||||||||
Sbjct 301 ATCAATTCCTATGTTCAATCTCAATCCCTAAACTT-ATCAATCTCTTACTTCAACGAAAT 359
Query 380 GGTCGATAAGGGTTTTGTTCCTGGATCGAATTGCTTCAACAATCTCTTAACTTTCGTTGT 439
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 360 GGTCGATAATGGTTTTGTTCCTGGATCGAATTGCTTCAACTATCTCTTAACTTTCGTTGT 419
Query 440 TGGGTCTTCTTCTTTCAATCAATGGTGGTGTTTCTTCAACGAGAGCAAAATCAAAGTTGT 499
|||||| ||||||||||||||||||||| ||||||||||||||| ||||| |||||||||
Sbjct 420 TGGGTCATCTTCTTTCAATCAATGGTGGAGTTTCTTCAACGAGAACAAAAGCAAAGTTGT 479
Query 500 TTTGGATGTGTATAGCTTTGGGATTGTGATCAAAGGTTGTTGTGAAGCTGGTGAGATTGA 559
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 480 TTTGGACGTGTATAGCTTTGGGATTCTGATCAAAGGTTGTTGTGAAGCTGGTGAGATTGA 539
Query 560 GAAAAGTTTTGATCTTCTTGTTGAATTAAGAGAGTTTGGGTTTTCTCCAAACGTTGTTAT 619
|||||| |||||||||||| ||||||| | ||||||||||||||||||||| || |||||
Sbjct 540 GAAAAGCTTTGATCTTCTTATTGAATTGACAGAGTTTGGGTTTTCTCCAAATGTAGTTAT 599
Query 620 CTACACTACTTTGATTGATGGGTGTTGCAAGAAAGGTGAGATTGAGAAGGCGAAAGATTT 679
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 600 CTACACTACTTTGATTGATGGGTGTTGCAAGAAAGGTGAGATTGAGAAGGCTAAAGATTT 659
Query 680 GTTTTTTGAGATGGGG-AAGTTCGGATTAGTGGCTAATGAGTGGACTTACACGGTTTTGA 738
|||||||||||||||| || || |||||||||||||||||| | ||||||||||||||||
Sbjct 660 GTTTTTTGAGATGGGGAAACTT-GGATTAGTGGCTAATGAGCGTACTTACACGGTTTTGA 718
Query 739 TTCATGGGTTATTCAAAAATGGGATTAAGAAACAAGGGTTTGAGATGTACGAGAAGATGC 798
|| |||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||
Sbjct 719 TTAATGGGTTATTCAAAAACGGGGTTAAGAAACAAGGGTTTGAGATGTATGAGAAGATGC 778
Query 799 AGGAACATGGTGTTTTCCCTAATCTCTATACTTATAACTGCGTGATGAATCAGCTTTGTA 858
||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 779 AGGAAGATGGAGTTTTCCCTAATCTCTATACTTATAACTGTGTGATGAATCAGCTTTGTA 838
Query 859 AAGATGGAAGAACAAAAGATGCATTTAAAGTGTTCGACGAAATGCGTGAGAGAGGGGTTT 918
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 839 AAGATGGAAGAACAAAAGATGCATTCCAAGTGTTCGACGAAATGCGTGAGAGAGGGGTTT 898
Query 919 CGTGTAATATTGTTACTTATAATACTTTGATTGGTGGGTTATGTAGAGAGATGAAGGCGA 978
| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 899 CTTGTAACATTGTCACTTATAATACTTTGATTGGTGGGTTATGTAGAGAGATGAAGTTGA 958
Query 979 ATGATGCAATTAAGGTTATGGATCAGATGAAGAGTTATGTAATCAACCCGAATCTGATTA 1038
|||| |||| ||| ||| ||||||| ||||||||| ||| ||||||||||||||||||||
Sbjct 959 ATGAGGCAAATAAAGTTGTGGATCAAATGAAGAGTGATGGAATCAACCCGAATCTGATTA 1018
Query 1039 CGTATAACACTTTGATTGATGGGTTTTGTAGTGTGGGTAAATTAGGGAAGGCGTTGAGTT 1098
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1019 CGTATAACACTTTGATTGATGGGTTTTGTGGTGTGGGAAAATTAGGGAAGGCGTTGAGTT 1078
Query 1099 TATGCAGAGATTTGAAGTCAAGAGGTTTGTCTCCGTCTTTGGTTACGTATAATGTTCTTG 1158
|||||||||||||||||||||||||| |||||||||| | || ||||||||| | || |
Sbjct 1079 TATGCAGAGATTTGAAGTCAAGAGGTCTGTCTCCGTCCCTCGTCACGTATAATATCCTAG 1138
Query 1159 TTTCCGGGTTCTGTAGAAAAGGAGATACTTCAGGAGCAGCTAAGATGGTTAAGGAGATGG 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TTTCCGGGTTCTGTAGAAAAGGAGATACTTCAGGAGCAGCTAAGATGGTTAAGGAGATGG 1198
Query 1219 AAGAGAGAGGGATTAAGCCGTCGAAAGTAACATACACGATTCTTATCGACACATTTGCTC 1278
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1199 AAGAGAGAGGGATTAAACCGTCGAAAGTAACATACACGATACTTATCGACACATTTGCTC 1258
Query 1279 GTTCAGATAACATGGAGACAGCAATTCAGCTTCGATCT-TCAATGGAGGAACTAGGATTA 1337
|||| ||||||||||||| |||||||||||||||| || |||||||||||||||||||||
Sbjct 1259 GTTCGGATAACATGGAGAAAGCAATTCAGCTTCGA-CTATCAATGGAGGAACTAGGATTA 1317
Query 1338 GTCCCGGATGTTCATACATATAGTGTACTGATTCACGGGTTTTGTATCAAAGGTCAAATG 1397
||||||||||||||||| ||||||||| ||||||| |||||||| |||||||||||||||
Sbjct 1318 GTCCCGGATGTTCATACCTATAGTGTATTGATTCATGGGTTTTGCATCAAAGGTCAAATG 1377
Query 1398 AATGAAGCGTCGAGGCTTTTTAAGTCGATGGTCGAAAAGA-T-GTTAGAACCGAACGAGG 1455
|||||||| || |||||||||||||||||||||||||||| | || |||||||||||||
Sbjct 1378 AATGAAGCATCTAGGCTTTTTAAGTCGATGGTCGAAAAGAATTGT--GAACCGAACGAGG 1435
Query 1456 TGATTTACAATACAATGATTCTTGGGTATTGTAAGGAAGGTAGTTCTTATAGAGCATTGA 1515
| || |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1436 TTATATACAATACGATGATTCTTGGTTATTGTAAGGAAGGTAGTTCTTATAGAGCATTGA 1495
Query 1516 GGTTG-TTCAGGGATATGGAAGAGAAAGAGTTGGCTCCAAATGTTGCTAGCTATAGTTAT 1574
|||| || ||| | |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1496 AGTTGCTTAAGG-AGATGGAAGAGAAAGAGTTGGCTCCAAATGTTGCTAGCTACAGATAT 1554
Query 1575 TTGATTCGA-GTTCTTTGTAAAGAAAGAAAATTGAAAGAAGCAGAA-GATTTGGTTGAGA 1632
||||| || |||||||||||||||||||||| ||||||||| || | ||| |||||||
Sbjct 1555 ATGATT-GAAGTTCTTTGTAAAGAAAGAAAATCGAAAGAAGCTGAGCG-TTTAGTTGAGA 1612
Query 1633 AGATGATTGATTCAGGGATTGATCCATCTGA-TACAATC-TGTAATTTGATCTCTAGAGC 1690
||||||||||||||||||||||||||||| | | ||||| | || |||||||||||||||
Sbjct 1613 AGATGATTGATTCAGGGATTGATCCATCT-ACTTCAATCCT-TAGTTTGATCTCTAGAGC 1670
Query 1691 CAAAA-CTGATTCACCTGTA-GCTCAAA-TAA 1719
||||| | ||||||| |||| ||||||| |||
Sbjct 1671 CAAAAAC-GATTCACATGTAAGCTCAAAATAA 1701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87449349390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5