BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943042 Length=1064 Score E Sequences producing significant alignments: (Bits) Value AT4G11770.1 | Symbols: | Galactose oxidase/kelch repeat superf... 632 2e-180 AT4G11750.1 | Symbols: | Galactose oxidase/kelch repeat superf... 422 4e-117 > AT4G11770.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr4:7082279-7083469 REVERSE LENGTH=1191 Length=1191 Score = 632 bits (342), Expect = 2e-180 Identities = 657/804 (82%), Gaps = 41/804 (5%) Strand=Plus/Plus Query 44 CGAGATTGTACTACCCGATTCTCTCCTTAGTTTCCAAGAGATATC-GCTCGCTCCTTACA 102 |||||||||||||||||||||||||||||||||||||||||| || |||| ||| || | Sbjct 83 CGAGATTGTACTACCCGATTCTCTCCTTAGTTTCCAAGAGAT-TCCGCTCTCTCGTTGGA 141 Query 103 TCGCTTGAGCTTTACGATATCCGAACGCTCTTAGGACG-C--ACTGAGAATTGTCTTTAT 159 || |||||||||||| | |||||||||||| ||||||| | |||||||||||||||||| Sbjct 142 TCACTTGAGCTTTACAAGATCCGAACGCTCCTAGGACGACGCACTGAGAATTGTCTTTAT 201 Query 160 GT-ATCCTTACGTTTGAGTTCTGAATCTAAGCCATGTTGGTTCACTTTATGCCGAAAACC 218 | | | |||||||| |||| || |||||| ||| ||||||||||| ||||||||| ||| Sbjct 202 CTGAGC-TTACGTTTCAGTTATGGATCTAACCCACGTTGGTTCACTCTATGCCGAAGACC 260 Query 219 AACTCCAATCCCAAACCCT-AGCCGTAACCCTAACTCACGATGGTTCACGTCTTGTTTTA 277 ||||| || ||| | |||| | || ||||| ||| |||||||||||||| || || |||| Sbjct 261 AACTCGAACCCCTAGCCCTGAACC-TAACCTTAAGTCACGATGGTTCACATCCTGCTTTA 319 Query 278 GACCA-TA-TAA-AA-TCCTAAAGAATCGC-ACTAGGAAAGAAGAAAACAAGTCAAGTGA 332 ||||| | ||| || || | | | || ||||| || |||||||| |||| |||||| Sbjct 320 GACCAATCCTAACAAATC-TCACTAGG-GCCACTAGCAAGGAAGAAAAGAAGTTAAGTGA 377 Query 333 AAAGT-TTATGGTCTCAGTCCCAATTCGCAACGATTGTCCTCAGTTTGGGTTGACTAGTA 391 ||| | ||||||||||| |||| | | |||| |||||||||| || ||| |||||| ||| Sbjct 378 AAA-TCTTATGGTCTCAATCCCGACTAGCAATGATTGTCCTCTGTCTGGCTTGACTTGTA 436 Query 392 CCTTGGGTACCACAATTGGTTCTAATATCTACATGATCGGCGGCCACATCGATGGTGCGG 451 || |||||||||||| ||||||||||||| || || |||| |||||| | Sbjct 437 --------AC-ACAATTGGTTCTTATATCTACATGATTGGGGGATACATAAATGGTGTGC 487 Query 452 TCTCGTCTAGGGTCTTCATCTTGGACTGTCGGTCTCACACCTGGCACGAAGCTCCAAGCA 511 |||| |||||||||||| ||||||| |||||||||||||||||||| ||||||||||||| Sbjct 488 TCTCATCTAGGGTCTTCTTCTTGGATTGTCGGTCTCACACCTGGCATGAAGCTCCAAGCA 547 Query 512 TGCAGAT-GTCCCGAAAGTGCCCACTCGT-AAGTGTTCTTGATGGAAAAATATATGTCGT 569 ||||| | | ||||||||| ||||||||| || |||||||||||| ||||||||||| || Sbjct 548 TGCAGGTAG-CCCGAAAGTCCCCACTCGTGAA-TGTTCTTGATGGGAAAATATATGTAGT 605 Query 570 GGACCGCAAGA-ATGTTGCCGATCCCTCGAATTTGATCGAGTTTTTCGATCCCAAAATCC 628 ||| || || | ||| ||||| ||||||| | |||||| ||||||||||||||| || Sbjct 606 GGAAGGCTGGAGAGGTT-CCGATTACTCGAATCTCATCGAGATTTTCGATCCCAAAACCC 664 Query 629 AAATATGGGAGCATGTTCCAATCCCTAGCGAGGAGTTACGTGGGAGTTATATAACAAGAA 688 ||| |||||| ||||| |||| |||||||| |||| | |||||||| |||||| ||| || Sbjct 665 AAAAATGGGAACATGTGCCAAGCCCTAGCGCGGAGATGCGTGGGAGGTATATATCAA-AA 723 Query 689 G-TTTAGTTCT-TGGCGAAAAACTTTACCTGTTTGGGTATAAAAGTACGGTTTACAAGCC 746 | |||||| || || ||||||||||||||||||||| |||||| | |||||||||||| Sbjct 724 GGTTTAGT-CTATGAAGAAAAACTTTACCTGTTTGGGGATAAAAATGTGGTTTACAAGCC 782 Query 747 TAAAGAACAA-ATATGGGATGTAGT-AGGATTGGAGAAGTGTTTGCGCTGGGTTCGCAAT 804 ||| ||| | | |||||||| || ||| || || | | |||| | | |||| || || Sbjct 783 TAAGGAA-AGTAGATGGGATGC-GTTAGGGTTTGATATGAATTTGTGGTTGGTTAGCTAT 840 Query 805 TCTTCTTCTTGCGTGATAGATAAT 828 |||||||||||||||||||||| Sbjct 841 GGTTCTTCTTGCGTGATAGATAAT 864 > AT4G11750.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr4:7077390-7078550 REVERSE LENGTH=1161 Length=1161 Score = 422 bits (228), Expect = 4e-117 Identities = 607/780 (78%), Gaps = 66/780 (8%) Strand=Plus/Plus Query 23 TGAACTGCTTAGCTCGCA-TCCCGAGATTGTACTACCCGATTCTCTCCTTAGTTTCCAAG 81 ||||||||||||| || | || |||||||||||||||||||||||||||| ||||||||| Sbjct 50 TGAACTGCTTAGCCCG-AGTCTCGAGATTGTACTACCCGATTCTCTCCTTGGTTTCCAAG 108 Query 82 AGATATC-GCTCGCTCCTTACATCGCTTGAGCTTTACGATATCCGAACGCTCTTAGGACG 140 |||| || | || ||| | |||||||||||||||| || ||| ||| ||||||||||| Sbjct 109 AGAT-TCCGTTCTCTCGTGGCATCGCTTGAGCTTTATGAGATCAGAAAGCTCTTAGGACA 167 Query 141 CACTGAGAATTGTCTTTATGT-ATCCTTACGTTTGAGTTCTGAATCTAAGCCATGTTGGT 199 || ||||| ||||||||| | | | |||||||| |||||||||||| |||| |||||| Sbjct 168 CAGGGAGAAGTGTCTTTATCTGAAC-TTACGTTTCAGTTCTGAATCTGAGCCGCGTTGGT 226 Query 200 TCACTTTATGCCGAAAACCAACTCCAATCCCAAACCCTAGCCGTAACCCTAACTCACGAT 259 ||||||||||||||| |||||||| || ||| ||||||| | | |||||| ||| Sbjct 227 TCACTTTATGCCGAAGACCAACTCGAAGCCCTAACCCTAATT-T--C---AACTCAGGAT 280 Query 260 GGTTCACGTCTTGTTTTAGACCATATAAAATCCTAAAGAATCGCACTAGGAAAGAAGAAA 319 ||||| | ||||| |||| |||| | | | || | | | || ||||| ||| Sbjct 281 GGTTCGCTTCTTGCTTTATACCACACA----C-TA-----T-G-A--AG-AAAGA-GAAG 324 Query 320 ACAAGTCAAGTGA-AA-AGTTT-ATGGTCTCAGTCCCAA-TTCGCAACG--ATTG-TCCT 372 | | ||||||||| || | | | |||||| ||||||||| ||| ||| ||| |||| Sbjct 325 A-A-GTCAAGTGACAACAATCTCATGGTCCCAGTCCCAACTTC-CAATTTTATTACTCCT 381 Query 373 CAGTTTGGGTTGACTAGTACCTTGGGTACCACAATTGGTTCTAATATCTACAT-GATCG- 430 | || || ||||||| ||| | |||| | | |||||||||||||| || | | | Sbjct 382 CCGTCTGAGTTGACTCGTATC------ACCA-A-T-GGTTCTAATATCTATATTGTTAGA 432 Query 431 GCGGCCACATCGATGGTGCGGTCTCGTCTAGGGTCTTCATCTTGGACTGTCGGTCTCACA 490 | ||| | | |||||| ||||||||||| |||| || |||||||||||||||||| Sbjct 433 GTATTCAC--CAACGGTGCGTTCTCGTCTAGGTTCTTGTTCATGGACTGTCGGTCTCACA 490 Query 491 CCTGGCACGAAGCTCCAAGCATGCAGATGTCCCGAAAGTGCCCACT-CGT-A--AGTGTT 546 ||| ||| |||| |||||| ||| | | | || |||| || || | | | || ||| Sbjct 491 CCTTGCATGAAGTTCCAAGAATGGATAAGACCAAAAAGAAACC-CTTCATGATTAGGGTT 549 Query 547 CTTGATGGAAAAATATATGTCGTGGAC--C-GCAAGAATGTTGCCGATCCCTCGAATTTG 603 |||||||| ||||||||||| | || | |||| ||| ||||| |||||||||| Sbjct 550 CTTGATGGGAAAATATATGTAATAGAAGGCTGCAAAAATC---CCGATTACTCGAATTTG 606 Query 604 ATCGAGTTTTTCGATCCCAAAATCCAAATATGGGAGCATGTTCCAATCCCTAGCGAGGAG 663 |||||| |||||||| ||||| ||||| |||||||||||| |||| |||||||| |||| Sbjct 607 ATCGAGCGTTTCGATCTCAAAACCCAAACATGGGAGCATGTGCCAAGCCCTAGCGCGGAG 666 Query 664 TTACGTGGGAGTTATATAACAAGAAGTTTAGTTCT-TGGCGAAAAACTTTACCTGTTTGG 722 ||||||| |||||||||||| |||||||||| || || || ||| |||||||||||||| Sbjct 667 ATACGTGGTAGTTATATAACAGGAAGTTTAGT-CTATGACGGAAAGCTTTACCTGTTTGG 725 Query 723 GTATAAAAGTACGGTTTACAAGCCTAAAGAACA-AATATGGGATGTAGTAGGATTGGAGA 781 | ||||| || |||||||||||| |||||| | || ||||||||| ||||||||||||| Sbjct 726 GGATAAACGTGTGGTTTACAAGCCCAAAGAAAATAA-ATGGGATGTGGTAGGATTGGAGA 784 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52108165710 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5