BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943042
Length=1064
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11770.1 | Symbols: | Galactose oxidase/kelch repeat superf... 632 2e-180
AT4G11750.1 | Symbols: | Galactose oxidase/kelch repeat superf... 422 4e-117
> AT4G11770.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:7082279-7083469 REVERSE LENGTH=1191
Length=1191
Score = 632 bits (342), Expect = 2e-180
Identities = 657/804 (82%), Gaps = 41/804 (5%)
Strand=Plus/Plus
Query 44 CGAGATTGTACTACCCGATTCTCTCCTTAGTTTCCAAGAGATATC-GCTCGCTCCTTACA 102
|||||||||||||||||||||||||||||||||||||||||| || |||| ||| || |
Sbjct 83 CGAGATTGTACTACCCGATTCTCTCCTTAGTTTCCAAGAGAT-TCCGCTCTCTCGTTGGA 141
Query 103 TCGCTTGAGCTTTACGATATCCGAACGCTCTTAGGACG-C--ACTGAGAATTGTCTTTAT 159
|| |||||||||||| | |||||||||||| ||||||| | ||||||||||||||||||
Sbjct 142 TCACTTGAGCTTTACAAGATCCGAACGCTCCTAGGACGACGCACTGAGAATTGTCTTTAT 201
Query 160 GT-ATCCTTACGTTTGAGTTCTGAATCTAAGCCATGTTGGTTCACTTTATGCCGAAAACC 218
| | | |||||||| |||| || |||||| ||| ||||||||||| ||||||||| |||
Sbjct 202 CTGAGC-TTACGTTTCAGTTATGGATCTAACCCACGTTGGTTCACTCTATGCCGAAGACC 260
Query 219 AACTCCAATCCCAAACCCT-AGCCGTAACCCTAACTCACGATGGTTCACGTCTTGTTTTA 277
||||| || ||| | |||| | || ||||| ||| |||||||||||||| || || ||||
Sbjct 261 AACTCGAACCCCTAGCCCTGAACC-TAACCTTAAGTCACGATGGTTCACATCCTGCTTTA 319
Query 278 GACCA-TA-TAA-AA-TCCTAAAGAATCGC-ACTAGGAAAGAAGAAAACAAGTCAAGTGA 332
||||| | ||| || || | | | || ||||| || |||||||| |||| ||||||
Sbjct 320 GACCAATCCTAACAAATC-TCACTAGG-GCCACTAGCAAGGAAGAAAAGAAGTTAAGTGA 377
Query 333 AAAGT-TTATGGTCTCAGTCCCAATTCGCAACGATTGTCCTCAGTTTGGGTTGACTAGTA 391
||| | ||||||||||| |||| | | |||| |||||||||| || ||| |||||| |||
Sbjct 378 AAA-TCTTATGGTCTCAATCCCGACTAGCAATGATTGTCCTCTGTCTGGCTTGACTTGTA 436
Query 392 CCTTGGGTACCACAATTGGTTCTAATATCTACATGATCGGCGGCCACATCGATGGTGCGG 451
|| |||||||||||| ||||||||||||| || || |||| |||||| |
Sbjct 437 --------AC-ACAATTGGTTCTTATATCTACATGATTGGGGGATACATAAATGGTGTGC 487
Query 452 TCTCGTCTAGGGTCTTCATCTTGGACTGTCGGTCTCACACCTGGCACGAAGCTCCAAGCA 511
|||| |||||||||||| ||||||| |||||||||||||||||||| |||||||||||||
Sbjct 488 TCTCATCTAGGGTCTTCTTCTTGGATTGTCGGTCTCACACCTGGCATGAAGCTCCAAGCA 547
Query 512 TGCAGAT-GTCCCGAAAGTGCCCACTCGT-AAGTGTTCTTGATGGAAAAATATATGTCGT 569
||||| | | ||||||||| ||||||||| || |||||||||||| ||||||||||| ||
Sbjct 548 TGCAGGTAG-CCCGAAAGTCCCCACTCGTGAA-TGTTCTTGATGGGAAAATATATGTAGT 605
Query 570 GGACCGCAAGA-ATGTTGCCGATCCCTCGAATTTGATCGAGTTTTTCGATCCCAAAATCC 628
||| || || | ||| ||||| ||||||| | |||||| ||||||||||||||| ||
Sbjct 606 GGAAGGCTGGAGAGGTT-CCGATTACTCGAATCTCATCGAGATTTTCGATCCCAAAACCC 664
Query 629 AAATATGGGAGCATGTTCCAATCCCTAGCGAGGAGTTACGTGGGAGTTATATAACAAGAA 688
||| |||||| ||||| |||| |||||||| |||| | |||||||| |||||| ||| ||
Sbjct 665 AAAAATGGGAACATGTGCCAAGCCCTAGCGCGGAGATGCGTGGGAGGTATATATCAA-AA 723
Query 689 G-TTTAGTTCT-TGGCGAAAAACTTTACCTGTTTGGGTATAAAAGTACGGTTTACAAGCC 746
| |||||| || || ||||||||||||||||||||| |||||| | ||||||||||||
Sbjct 724 GGTTTAGT-CTATGAAGAAAAACTTTACCTGTTTGGGGATAAAAATGTGGTTTACAAGCC 782
Query 747 TAAAGAACAA-ATATGGGATGTAGT-AGGATTGGAGAAGTGTTTGCGCTGGGTTCGCAAT 804
||| ||| | | |||||||| || ||| || || | | |||| | | |||| || ||
Sbjct 783 TAAGGAA-AGTAGATGGGATGC-GTTAGGGTTTGATATGAATTTGTGGTTGGTTAGCTAT 840
Query 805 TCTTCTTCTTGCGTGATAGATAAT 828
||||||||||||||||||||||
Sbjct 841 GGTTCTTCTTGCGTGATAGATAAT 864
> AT4G11750.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:7077390-7078550 REVERSE LENGTH=1161
Length=1161
Score = 422 bits (228), Expect = 4e-117
Identities = 607/780 (78%), Gaps = 66/780 (8%)
Strand=Plus/Plus
Query 23 TGAACTGCTTAGCTCGCA-TCCCGAGATTGTACTACCCGATTCTCTCCTTAGTTTCCAAG 81
||||||||||||| || | || |||||||||||||||||||||||||||| |||||||||
Sbjct 50 TGAACTGCTTAGCCCG-AGTCTCGAGATTGTACTACCCGATTCTCTCCTTGGTTTCCAAG 108
Query 82 AGATATC-GCTCGCTCCTTACATCGCTTGAGCTTTACGATATCCGAACGCTCTTAGGACG 140
|||| || | || ||| | |||||||||||||||| || ||| ||| |||||||||||
Sbjct 109 AGAT-TCCGTTCTCTCGTGGCATCGCTTGAGCTTTATGAGATCAGAAAGCTCTTAGGACA 167
Query 141 CACTGAGAATTGTCTTTATGT-ATCCTTACGTTTGAGTTCTGAATCTAAGCCATGTTGGT 199
|| ||||| ||||||||| | | | |||||||| |||||||||||| |||| ||||||
Sbjct 168 CAGGGAGAAGTGTCTTTATCTGAAC-TTACGTTTCAGTTCTGAATCTGAGCCGCGTTGGT 226
Query 200 TCACTTTATGCCGAAAACCAACTCCAATCCCAAACCCTAGCCGTAACCCTAACTCACGAT 259
||||||||||||||| |||||||| || ||| ||||||| | | |||||| |||
Sbjct 227 TCACTTTATGCCGAAGACCAACTCGAAGCCCTAACCCTAATT-T--C---AACTCAGGAT 280
Query 260 GGTTCACGTCTTGTTTTAGACCATATAAAATCCTAAAGAATCGCACTAGGAAAGAAGAAA 319
||||| | ||||| |||| |||| | | | || | | | || ||||| |||
Sbjct 281 GGTTCGCTTCTTGCTTTATACCACACA----C-TA-----T-G-A--AG-AAAGA-GAAG 324
Query 320 ACAAGTCAAGTGA-AA-AGTTT-ATGGTCTCAGTCCCAA-TTCGCAACG--ATTG-TCCT 372
| | ||||||||| || | | | |||||| ||||||||| ||| ||| ||| ||||
Sbjct 325 A-A-GTCAAGTGACAACAATCTCATGGTCCCAGTCCCAACTTC-CAATTTTATTACTCCT 381
Query 373 CAGTTTGGGTTGACTAGTACCTTGGGTACCACAATTGGTTCTAATATCTACAT-GATCG- 430
| || || ||||||| ||| | |||| | | |||||||||||||| || | | |
Sbjct 382 CCGTCTGAGTTGACTCGTATC------ACCA-A-T-GGTTCTAATATCTATATTGTTAGA 432
Query 431 GCGGCCACATCGATGGTGCGGTCTCGTCTAGGGTCTTCATCTTGGACTGTCGGTCTCACA 490
| ||| | | |||||| ||||||||||| |||| || ||||||||||||||||||
Sbjct 433 GTATTCAC--CAACGGTGCGTTCTCGTCTAGGTTCTTGTTCATGGACTGTCGGTCTCACA 490
Query 491 CCTGGCACGAAGCTCCAAGCATGCAGATGTCCCGAAAGTGCCCACT-CGT-A--AGTGTT 546
||| ||| |||| |||||| ||| | | | || |||| || || | | | || |||
Sbjct 491 CCTTGCATGAAGTTCCAAGAATGGATAAGACCAAAAAGAAACC-CTTCATGATTAGGGTT 549
Query 547 CTTGATGGAAAAATATATGTCGTGGAC--C-GCAAGAATGTTGCCGATCCCTCGAATTTG 603
|||||||| ||||||||||| | || | |||| ||| ||||| ||||||||||
Sbjct 550 CTTGATGGGAAAATATATGTAATAGAAGGCTGCAAAAATC---CCGATTACTCGAATTTG 606
Query 604 ATCGAGTTTTTCGATCCCAAAATCCAAATATGGGAGCATGTTCCAATCCCTAGCGAGGAG 663
|||||| |||||||| ||||| ||||| |||||||||||| |||| |||||||| ||||
Sbjct 607 ATCGAGCGTTTCGATCTCAAAACCCAAACATGGGAGCATGTGCCAAGCCCTAGCGCGGAG 666
Query 664 TTACGTGGGAGTTATATAACAAGAAGTTTAGTTCT-TGGCGAAAAACTTTACCTGTTTGG 722
||||||| |||||||||||| |||||||||| || || || ||| ||||||||||||||
Sbjct 667 ATACGTGGTAGTTATATAACAGGAAGTTTAGT-CTATGACGGAAAGCTTTACCTGTTTGG 725
Query 723 GTATAAAAGTACGGTTTACAAGCCTAAAGAACA-AATATGGGATGTAGTAGGATTGGAGA 781
| ||||| || |||||||||||| |||||| | || ||||||||| |||||||||||||
Sbjct 726 GGATAAACGTGTGGTTTACAAGCCCAAAGAAAATAA-ATGGGATGTGGTAGGATTGGAGA 784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52108165710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5