BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943043

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G11760.1 | Symbols: LCR17 | low-molecular-weight cysteine-ri...   191    4e-48


> AT4G11760.1 | Symbols: LCR17 | low-molecular-weight cysteine-rich 
17 | chr4:7079316-7080445 FORWARD LENGTH=612
Length=612

 Score =  191 bits (103),  Expect = 4e-48
 Identities = 156/182 (86%), Gaps = 2/182 (1%)
 Strand=Plus/Plus

Query  14   AGCATACGAGATGAAGAAACCCAGTCAACTATCGGCCACCATTCTTACCATCTTCACCAT  73
            ||||||| ||||||||||||||||||||||||||||||||||||| || |||||    ||
Sbjct  1    AGCATACAAGATGAAGAAACCCAGTCAACTATCGGCCACCATTCTAACTATCTTTGTGAT  60

Query  74   CCTTGCTATAGGGGTGATGGTGAAGGAAACAGTAGGACAGGCGCC-ACATAATTGTGTTG  132
            ||||||||||||||||||||||||||||||| | ||||| ||||| |  || |||| |||
Sbjct  61   CCTTGCTATAGGGGTGATGGTGAAGGAAACATTGGGACAAGCGCCGAG-TACTTGTTTTG  119

Query  133  AAATTCTTAAAGAAGCTTCAAAGGGTGCAACATGCGACGCCAAATTGTGTGCCTCTCAAT  192
            ||  ||| ||||| ||||| ||||||||| |||| ||| |  ||||||||||||||| ||
Sbjct  120  AAGCTCTAAAAGATGCTTCTAAGGGTGCATCATGTGACTCGGAATTGTGTGCCTCTCTAT  179

Query  193  GT  194
            ||
Sbjct  180  GT  181



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15281395696


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5