BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943045
Length=320
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11770.1 | Symbols: | Galactose oxidase/kelch repeat superf... 248 2e-65
> AT4G11770.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:7082279-7083469 REVERSE LENGTH=1191
Length=1191
Score = 248 bits (134), Expect = 2e-65
Identities = 210/245 (86%), Gaps = 11/245 (4%)
Strand=Plus/Plus
Query 21 ATGACGAACGGCA-AAGAGTCTTCAACGTTTAATATGCCTTACCTTCCAGATGATATACT 79
|||| |||||||| || |||||||| ||| |||||||||||||||||| |||||| ||||
Sbjct 1 ATGATGAACGGCATAA-AGTCTTCACCGTGTAATATGCCTTACCTTCCTGATGATTTACT 59
Query 80 GTTGCAC-TGCTTA-GCTCGTGTCTCGAGATTGTACTACCCAATTCTCTCCTTAGTTTCC 137
|| || | |||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 60 ATTAAACAT-CTTAGGC-CGTGTCTCGAGATTGTACTACCCGATTCTCTCCTTAGTTTCC 117
Query 138 AAGAGATTCCGCTCTCTCGTTGCATCACTTGAGCTTCACGACATCCGAATAG-TCTTAGG 196
|||||||||||||||||||||| ||||||||||||| || | ||||||| | || ||||
Sbjct 118 AAGAGATTCCGCTCTCTCGTTGGATCACTTGAGCTTTACAAGATCCGAAC-GCTCCTAGG 176
Query 197 ACG-CAC-C-GAGAATTGTCTTTATATGTGCTTATATTTCAGTTCTGAATCTAAGCCATG 253
||| | | | ||||||||||||||| || ||||| |||||||| || |||||| ||| |
Sbjct 177 ACGACGCACTGAGAATTGTCTTTATCTGAGCTTACGTTTCAGTTATGGATCTAACCCACG 236
Query 254 TTGGT 258
|||||
Sbjct 237 TTGGT 241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14879253704
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5