BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943049 Length=416 Score E Sequences producing significant alignments: (Bits) Value AT1G18040.1 | Symbols: CDKD1;3, AT;CDCKD;3, CAK2AT | cyclin-dep... 200 8e-51 AT1G73690.1 | Symbols: CDKD1;1, AT;CDKD;1, CAK3AT | cyclin-depe... 183 8e-46 > AT1G18040.1 | Symbols: CDKD1;3, AT;CDCKD;3, CAK2AT | cyclin-dependent kinase D1;3 | chr1:6206871-6209500 REVERSE LENGTH=1634 Length=1634 Score = 200 bits (108), Expect = 8e-51 Identities = 123/130 (95%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 135 CAGGTGTTTGCTAGATGGTACAGAGCACCAGAACTTTTGTTTGGTGCTAAAA-AATATGG 193 ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| Sbjct 706 CAGGTGTTTGCTAGATGGTACAGAGCACCAGAACTTTTGTTTGGTGC-AAAACAATATGG 764 Query 194 TGCTGCAGTTGATGTTTGGGCTGCTGGCTGCATATTCGCTGAACTTCTGCTACGCAGACC 253 ||||||||||||||||||||| | || |||||||||||| |||||||| ||||||||||| Sbjct 765 TGCTGCAGTTGATGTTTGGGCCGTTGCCTGCATATTCGCCGAACTTCTACTACGCAGACC 824 Query 254 ATTTCTTCAG 263 |||||||||| Sbjct 825 ATTTCTTCAG 834 > AT1G73690.1 | Symbols: CDKD1;1, AT;CDKD;1, CAK3AT | cyclin-dependent kinase D1;1 | chr1:27714948-27717281 FORWARD LENGTH=1625 Length=1625 Score = 183 bits (99), Expect = 8e-46 Identities = 120/130 (92%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 135 CAGGTGTTTGCTAGATGGTACAGAGCACCAGAACTTTTGTTTGGTGCTAAAA-AATATGG 193 |||||||||||||||||||| |||||||| ||||||||||||||||| |||| |||||| Sbjct 667 CAGGTGTTTGCTAGATGGTATAGAGCACCTGAACTTTTGTTTGGTGC-AAAACAATATGA 725 Query 194 TGCTGCAGTTGATGTTTGGGCTGCTGGCTGCATATTCGCTGAACTTCTGCTACGCAGACC 253 || |||||||||||||||||||||||||||||| || ||||||||||| |||||||||| Sbjct 726 TGGTGCAGTTGATGTTTGGGCTGCTGGCTGCATTTTTGCTGAACTTCTATTACGCAGACC 785 Query 254 ATTTCTTCAG 263 |||||||||| Sbjct 786 ATTTCTTCAG 795 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19704957608 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5