BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943049

Length=416
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G18040.1 | Symbols: CDKD1;3, AT;CDCKD;3, CAK2AT | cyclin-dep...   200    8e-51
  AT1G73690.1 | Symbols: CDKD1;1, AT;CDKD;1, CAK3AT | cyclin-depe...   183    8e-46


> AT1G18040.1 | Symbols: CDKD1;3, AT;CDCKD;3, CAK2AT | cyclin-dependent 
kinase D1;3 | chr1:6206871-6209500 REVERSE LENGTH=1634
Length=1634

 Score =  200 bits (108),  Expect = 8e-51
 Identities = 123/130 (95%), Gaps = 2/130 (2%)
 Strand=Plus/Plus

Query  135  CAGGTGTTTGCTAGATGGTACAGAGCACCAGAACTTTTGTTTGGTGCTAAAA-AATATGG  193
            ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct  706  CAGGTGTTTGCTAGATGGTACAGAGCACCAGAACTTTTGTTTGGTGC-AAAACAATATGG  764

Query  194  TGCTGCAGTTGATGTTTGGGCTGCTGGCTGCATATTCGCTGAACTTCTGCTACGCAGACC  253
            ||||||||||||||||||||| | || |||||||||||| |||||||| |||||||||||
Sbjct  765  TGCTGCAGTTGATGTTTGGGCCGTTGCCTGCATATTCGCCGAACTTCTACTACGCAGACC  824

Query  254  ATTTCTTCAG  263
            ||||||||||
Sbjct  825  ATTTCTTCAG  834


> AT1G73690.1 | Symbols: CDKD1;1, AT;CDKD;1, CAK3AT | cyclin-dependent 
kinase D1;1 | chr1:27714948-27717281 FORWARD LENGTH=1625
Length=1625

 Score =  183 bits (99),  Expect = 8e-46
 Identities = 120/130 (92%), Gaps = 2/130 (2%)
 Strand=Plus/Plus

Query  135  CAGGTGTTTGCTAGATGGTACAGAGCACCAGAACTTTTGTTTGGTGCTAAAA-AATATGG  193
            |||||||||||||||||||| |||||||| ||||||||||||||||| |||| |||||| 
Sbjct  667  CAGGTGTTTGCTAGATGGTATAGAGCACCTGAACTTTTGTTTGGTGC-AAAACAATATGA  725

Query  194  TGCTGCAGTTGATGTTTGGGCTGCTGGCTGCATATTCGCTGAACTTCTGCTACGCAGACC  253
            || |||||||||||||||||||||||||||||| || |||||||||||  ||||||||||
Sbjct  726  TGGTGCAGTTGATGTTTGGGCTGCTGGCTGCATTTTTGCTGAACTTCTATTACGCAGACC  785

Query  254  ATTTCTTCAG  263
            ||||||||||
Sbjct  786  ATTTCTTCAG  795



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19704957608


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5