BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943051
Length=350
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16120.2 | Symbols: | alpha/beta-Hydrolases superfamily pro... 235 2e-61
> AT5G16120.2 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:5265633-5267916 FORWARD LENGTH=1438
Length=1438
Score = 235 bits (127), Expect = 2e-61
Identities = 183/209 (88%), Gaps = 8/209 (4%)
Strand=Plus/Plus
Query 33 gaaggaagtttggtgtggcgaaagaa-gagaTCGATGGCTCCGA-TGCGAAGCT--A-GA 87
||| |||| | | |||||| |||||| || |||||||||||||| |||| ||| | |
Sbjct 210 GAA-GAAGATCGTTGTGGC-AAAGAAGGAAATCGATGGCTCCGACGGCGACGCTGGACAA 267
Query 88 CAATGAGGAGCTTGGGCGACTCAAGGAGGTTAATATTGACGAAGCTTCGGCGCGTCGTTA 147
|||||||||||| ||||||||| |||||||||||||||||||||| ||| |||||||
Sbjct 268 CAATGAGGAGCTCCGGCGACTCAGGGAGGTTAATATTGACGAAGCTCCGGGGCGTCGTCG 327
Query 148 TGTTCGTGATTCCTTGAAAGATGTCCAGCTTAATCTCGATCATATCCTCTTCAAGACACC 207
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 328 TGTTCGTGATTCCTTGAAAGATATTCAGCTTAATCTCGATCATATCCTCTTCAAGACACC 387
Query 208 AGAGACTGGGATTAAGACAAAGGAG-CTT 235
||| | ||||||||||||||||||| |||
Sbjct 388 AGAAAATGGGATTAAGACAAAGGAGTCTT 416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16387286174
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5