BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943052 Length=589 Score E Sequences producing significant alignments: (Bits) Value AT3G05770.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 608 2e-173 AT1G54300.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 435 3e-121 > AT3G05770.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54300.1); Has 105 Blast hits to 105 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr3:1710013-1712165 REVERSE LENGTH=1548 Length=1548 Score = 608 bits (329), Expect = 2e-173 Identities = 433/482 (90%), Gaps = 11/482 (2%) Strand=Plus/Plus Query 37 CCACGTCTAAACTTGCCTCTAACAACGACTCCGGAGCTTATCAACAAGATTGAAACTTAC 96 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||| Sbjct 70 CCACGTCTAAACTTGCCTCTAACAAAAACTCCGGAACTTATCAACAAGATTGAAAGTTAC 129 Query 97 CTCAATA-AAAACTACACATGTCCTCATCAACAAATAGAGAA--C-TCAAAGACCTCAAT 152 ||||| | | |||||||||||||||||||||||| |||||| | |||||||| |||| Sbjct 130 CTCAA-AGTACACTACACATGTCCTCATCAACAAACAGAGAACTCATCAAAGACATCAAC 188 Query 153 TCTTCCTAAGAGTTCTGAGAAACTAAAAGCTATGAATTTCCCAATCTCCATGATCAAAAT 212 |||||| ||| | |||||||||||||||||||||||||||||||||||| |||||| || Sbjct 189 TCTTCCCAAGTCTCCTGAGAAACTAAAAGCTATGAATTTCCCAATCTCCACGATCAAGAT 248 Query 213 TGG-AACATG-GACCCCCGTTG-CAATAAACCCTGAAGATATTGTGGCAAAATTCTATTT 269 ||| || || | | ||||| ||| ||||||||| || |||||||| ||||||||||| Sbjct 249 TGGCGAC-TGTG-TCTTCGTTGCCAA-AAACCCTGATGACATTGTGGCCAAATTCTATTT 305 Query 270 TGCAAAGAAGAAACTTATATGGGAGTTTCTCTTCGGAGAAGAAGAAACTAACATGCCAAG 329 |||||||||||||||| ||||||||||||||||||||||| || |||||||||| || Sbjct 306 TGCAAAGAAGAAACTTTTATGGGAGTTTCTCTTCGGAGAACCAGTGGCTAACATGCCGAG 365 Query 330 GCTGAAGAGAAAGATCGAGATTCAATGGAATGATGTCTCATCTTTTGAAGAGAGTATTTA 389 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 366 GCTGAAGAGTAAGATCGAGATTCAATGGAATGATGTCTCATCTTTTGAAGAGAGTATTAA 425 Query 390 TACACATGATGAAACTGGAATCCTCAAAATCGAGTTGAGAAAACGTCCAACATTCTTCAT 449 | ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 426 TTCACGTGATGAAACTGGAATCCTCAAAATCGAGTTGAAAAAACGTCCAACATTCTTCAC 485 Query 450 AGAGACTAATCCACAGGCAGGAAAACACACTCAATGGAAACAGTTGGATCGCGATTTCAC 509 |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 486 AGAGACTAATCCACAGGCAGGAAAACACACTCAATGGAAACAATTGGATTACGATTTCAC 545 Query 510 CG 511 || Sbjct 546 CG 547 > AT1G54300.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05770.1); Has 107 Blast hits to 107 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). | chr1:20270810-20272106 FORWARD LENGTH=1042 Length=1042 Score = 435 bits (235), Expect = 3e-121 Identities = 300/331 (91%), Gaps = 6/331 (2%) Strand=Plus/Plus Query 184 ATGAATTTCCCAATCTCCATGATCAAAATTGGAACATGGACCCCCGTTG-CAATAAACCC 242 ||||||||||||||||||| ||||| ||||| |||| | ||||| ||| |||||| Sbjct 1 ATGAATTTCCCAATCTCCACGATCAGGATTGGCGGATGGGTCGTCGTTGCCAA-AAACCC 59 Query 243 TGAAGATATTGTGGCAAAATTCTATTTTGCAAAGAAGAAACTTATATGGGAGTTTCTCTT 302 ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 TGATGACATTGTGGCCAAATTCTATTTTGCAAAGAAGAAACTTATATGGGAGTTTCTCTT 119 Query 303 CGGAGAAGAAGAAACTAACATGCCAAGGCTGAAGA-GAAAGATCGAGATTCAATGGAATG 361 ||||||| ||| ||||||| || |||||||| | | |||||||||||||||||||||| Sbjct 120 CGGAGAACCAGAGACTAACACGCTGAGGCTGAA-ACGTAAGATCGAGATTCAATGGAATG 178 Query 362 ATGTCTCATCTTTTGAAGAGAGTATTTA-TACACATGATGAAACTGGAATCCTCAAAATC 420 |||||||||||||||||||||||| ||| | ||| ||||||||||||||||||||||||| Sbjct 179 ATGTCTCATCTTTTGAAGAGAGTA-TTAGTTCACGTGATGAAACTGGAATCCTCAAAATC 237 Query 421 GAGTTGAGAAAACGTCCAACATTCTTCATAGAGACTAATCCACAGGCAGGAAAACACACT 480 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 GAGTTGAAAAAACGTCCAACATTCTTCATAGAGACTAATCCACAGGCAGGAAAACACACT 297 Query 481 CAATGGAAACAGTTGGATCGCGATTTCACCG 511 ||||||||||| ||||||| ||||||||||| Sbjct 298 CAATGGAAACAATTGGATCACGATTTCACCG 328 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28332058908 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5