BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943052
Length=589
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05770.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 608 2e-173
AT1G54300.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 435 3e-121
> AT3G05770.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G54300.1);
Has 105 Blast hits to 105 proteins in 16 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses
- 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr3:1710013-1712165
REVERSE LENGTH=1548
Length=1548
Score = 608 bits (329), Expect = 2e-173
Identities = 433/482 (90%), Gaps = 11/482 (2%)
Strand=Plus/Plus
Query 37 CCACGTCTAAACTTGCCTCTAACAACGACTCCGGAGCTTATCAACAAGATTGAAACTTAC 96
||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||
Sbjct 70 CCACGTCTAAACTTGCCTCTAACAAAAACTCCGGAACTTATCAACAAGATTGAAAGTTAC 129
Query 97 CTCAATA-AAAACTACACATGTCCTCATCAACAAATAGAGAA--C-TCAAAGACCTCAAT 152
||||| | | |||||||||||||||||||||||| |||||| | |||||||| ||||
Sbjct 130 CTCAA-AGTACACTACACATGTCCTCATCAACAAACAGAGAACTCATCAAAGACATCAAC 188
Query 153 TCTTCCTAAGAGTTCTGAGAAACTAAAAGCTATGAATTTCCCAATCTCCATGATCAAAAT 212
|||||| ||| | |||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 189 TCTTCCCAAGTCTCCTGAGAAACTAAAAGCTATGAATTTCCCAATCTCCACGATCAAGAT 248
Query 213 TGG-AACATG-GACCCCCGTTG-CAATAAACCCTGAAGATATTGTGGCAAAATTCTATTT 269
||| || || | | ||||| ||| ||||||||| || |||||||| |||||||||||
Sbjct 249 TGGCGAC-TGTG-TCTTCGTTGCCAA-AAACCCTGATGACATTGTGGCCAAATTCTATTT 305
Query 270 TGCAAAGAAGAAACTTATATGGGAGTTTCTCTTCGGAGAAGAAGAAACTAACATGCCAAG 329
|||||||||||||||| ||||||||||||||||||||||| || |||||||||| ||
Sbjct 306 TGCAAAGAAGAAACTTTTATGGGAGTTTCTCTTCGGAGAACCAGTGGCTAACATGCCGAG 365
Query 330 GCTGAAGAGAAAGATCGAGATTCAATGGAATGATGTCTCATCTTTTGAAGAGAGTATTTA 389
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 366 GCTGAAGAGTAAGATCGAGATTCAATGGAATGATGTCTCATCTTTTGAAGAGAGTATTAA 425
Query 390 TACACATGATGAAACTGGAATCCTCAAAATCGAGTTGAGAAAACGTCCAACATTCTTCAT 449
| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 426 TTCACGTGATGAAACTGGAATCCTCAAAATCGAGTTGAAAAAACGTCCAACATTCTTCAC 485
Query 450 AGAGACTAATCCACAGGCAGGAAAACACACTCAATGGAAACAGTTGGATCGCGATTTCAC 509
|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 486 AGAGACTAATCCACAGGCAGGAAAACACACTCAATGGAAACAATTGGATTACGATTTCAC 545
Query 510 CG 511
||
Sbjct 546 CG 547
> AT1G54300.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G05770.1);
Has 107 Blast hits to 107 proteins in 18 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses
- 0; Other Eukaryotes - 13 (source: NCBI BLink). | chr1:20270810-20272106
FORWARD LENGTH=1042
Length=1042
Score = 435 bits (235), Expect = 3e-121
Identities = 300/331 (91%), Gaps = 6/331 (2%)
Strand=Plus/Plus
Query 184 ATGAATTTCCCAATCTCCATGATCAAAATTGGAACATGGACCCCCGTTG-CAATAAACCC 242
||||||||||||||||||| ||||| ||||| |||| | ||||| ||| ||||||
Sbjct 1 ATGAATTTCCCAATCTCCACGATCAGGATTGGCGGATGGGTCGTCGTTGCCAA-AAACCC 59
Query 243 TGAAGATATTGTGGCAAAATTCTATTTTGCAAAGAAGAAACTTATATGGGAGTTTCTCTT 302
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TGATGACATTGTGGCCAAATTCTATTTTGCAAAGAAGAAACTTATATGGGAGTTTCTCTT 119
Query 303 CGGAGAAGAAGAAACTAACATGCCAAGGCTGAAGA-GAAAGATCGAGATTCAATGGAATG 361
||||||| ||| ||||||| || |||||||| | | ||||||||||||||||||||||
Sbjct 120 CGGAGAACCAGAGACTAACACGCTGAGGCTGAA-ACGTAAGATCGAGATTCAATGGAATG 178
Query 362 ATGTCTCATCTTTTGAAGAGAGTATTTA-TACACATGATGAAACTGGAATCCTCAAAATC 420
|||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||||||
Sbjct 179 ATGTCTCATCTTTTGAAGAGAGTA-TTAGTTCACGTGATGAAACTGGAATCCTCAAAATC 237
Query 421 GAGTTGAGAAAACGTCCAACATTCTTCATAGAGACTAATCCACAGGCAGGAAAACACACT 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GAGTTGAAAAAACGTCCAACATTCTTCATAGAGACTAATCCACAGGCAGGAAAACACACT 297
Query 481 CAATGGAAACAGTTGGATCGCGATTTCACCG 511
||||||||||| ||||||| |||||||||||
Sbjct 298 CAATGGAAACAATTGGATCACGATTTCACCG 328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28332058908
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5