BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943056
Length=325
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35467.1 | Symbols: RALFL5 | RALF-like 5 | chr1:13049164-130... 263 8e-70
> AT1G35467.1 | Symbols: RALFL5 | RALF-like 5 | chr1:13049164-13049433
FORWARD LENGTH=270
Length=270
Score = 263 bits (142), Expect = 8e-70
Identities = 244/289 (84%), Gaps = 23/289 (8%)
Strand=Plus/Plus
Query 21 ATGATGAAAGCACAAGTGTTTATGTTTGTGACAGTTTTGACTTTTGTATGTGTGTTTATA 80
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 ATGTTGAAAGCACAAGTGTTTATGTTTGTGACAGTTTTGGTTTTTGTATGTGTGTTTATA 60
Query 81 AGTAGCACTGATGCCATAAGGTATATT-ATATATCCTCCAGTG-CATAAACATCCTAATG 138
| ||||| |||||| | |||||||||| | |||||||||| || || ||||||||| ||
Sbjct 61 AATAGCAATGATGCGAAAAGGTATATTGA-ATATCCTCCA-TGGCAAAAACATCCT--TG 116
Query 139 GATGTGATCCAAGATTTCCAACTCCCGCAT-GTTATAAGCGCACACCAGAGAATCCATAT 197
| |||||||||||||||| |||| || |||||||||| ||||||| |||||||||
Sbjct 117 TA----ATCCAAGATTTCCAACACCCG-ATTGTTATAAGCGTACACCAGCTAATCCATAT 171
Query 198 AGACGAGGATGTTCGTGTATCACTAGATGCCGCCGTGAGAATTGTGGACCAAACAGAGTA 257
|||||||||||| ||||||||| ||||||||||||||| ||||||| || ||
Sbjct 172 AGACGAGGATGTACGTGTATCAGTAGATGCCGCCGTGA---TTGTGGAG------GATTA 222
Query 258 TCATCTTTGaaaaaaaTTTTGGATA-AAGTTTTGGAAATACCAGTGTAA 305
||| ||| ||| ||| ||||||||| || ||||| ||||||||||||||
Sbjct 223 TCAACTTGGAAGAAACTTTTGGATACAA-TTTTGAAAATACCAGTGTAA 270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15130592449
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5