BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943059

Length=193
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G11740.1 | Symbols: SAY1 | Ubiquitin-like superfamily protei...  73.1    8e-13


> AT4G11740.1 | Symbols: SAY1 | Ubiquitin-like superfamily protein 
| chr4:7071860-7075501 FORWARD LENGTH=2035
Length=2035

 Score = 73.1 bits (39),  Expect = 8e-13
 Identities = 39/39 (100%), Gaps = 0/39 (0%)
 Strand=Plus/Plus

Query  155   TTGGAGATGGGGAAAGTGAGTCGACCTTAAACGATCTTG  193
             |||||||||||||||||||||||||||||||||||||||
Sbjct  1708  TTGGAGATGGGGAAAGTGAGTCGACCTTAAACGATCTTG  1746



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8551229670


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5