BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943062

Length=241
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G16143.1 | Symbols: IMPA-2 | importin alpha isoform 2 | chr4...   174    3e-43


> AT4G16143.1 | Symbols: IMPA-2 | importin alpha isoform 2 | chr4:9133937-9137353 
REVERSE LENGTH=2217
Length=2217

 Score =  174 bits (94),  Expect = 3e-43
 Identities = 132/149 (89%), Gaps = 7/149 (5%)
 Strand=Plus/Plus

Query  99   ACTGAGGTTCGTCGGAACCGCTACAAAGTAGCGGTGGATGCAGAAGAAGGAAGACGGAGG  158
            ||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct  244  ACTGAGGTTCGCCGGAACCGCTACAAAGTGGCGGTGGATGCTGAGGAAGGAAGACGGAGG  303

Query  159  AGAGAGGACAACATGGTTGAGA-----AA-AGTAAGCGTGAAGAAAGCTTACTTTTAGAA  212
            ||||||||||||||||| ||||     || ||||||||||||||||||||||    ||||
Sbjct  304  AGAGAGGACAACATGGTCGAGATCCGTAAGAGTAAGCGTGAAGAAAGCTTACAGA-AGAA  362

Query  213  GCGTCCTGAAGGTCTTCAAGCTAATCAGC  241
            ||||| |||||| ||||||||||||||||
Sbjct  363  GCGTCGTGAAGGCCTTCAAGCTAATCAGC  391



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10908101533


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5