BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943069 Length=1429 Score E Sequences producing significant alignments: (Bits) Value AT4G11820.2 | Symbols: MVA1, FKP1 | hydroxymethylglutaryl-CoA s... 2357 0.0 > AT4G11820.2 | Symbols: MVA1, FKP1 | hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase | chr4:7108915-7112030 REVERSE LENGTH=1724 Length=1724 Score = 2357 bits (1276), Expect = 0.0 Identities = 1379/1430 (96%), Gaps = 2/1430 (0%) Strand=Plus/Plus Query 1 TTCTTTTCGTTTTCATCGAAACAATGGCGAAGAACGTTGGGATTTTGGCTATGGATATCT 60 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 108 TTC-TTTCGTTTTCATCGAAACAATGGCGAAGAACGTTGGGATTTTGGCTATGGATATCT 166 Query 61 ATTTCCCTCCCACTTGTGTTCAACAGGAAGCATTGGAAGCCCATGATGGAGCAAGCAAAG 120 ||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| |||| Sbjct 167 ATTTCCCTCCCACCTGTGTTCAACAGGAAGCTTTGGAAGCACATGATGGAGCAAGTAAAG 226 Query 121 GGAAATACACTATTGGACTTGGCCAAGATTGCTTAGCTTTTTGCACTGAGCTTGAAGATG 180 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 227 GGAAATACACTATTGGACTTGGCCAAGATTGTTTAGCTTTTTGCACTGAGCTTGAAGATG 286 Query 181 TTATCTCTATGAGTTTCAATGCGGTGACATCACTTTTTGAGAAGTATAAGATTGACCCTA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 287 TTATCTCTATGAGTTTCAATGCGGTGACATCACTTTTTGAGAAGTATAAGATTGACCCTA 346 Query 241 ACCAAATCGGGCGTCTTGAAGTAGGAAGTGAGACTGTCATTGATAAAAGCAAATCCATCA 300 ||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||| Sbjct 347 ACCAAATCGGGCGTCTTGAAGTAGGAAGTGAGACTGTTATTGACAAAAGCAAGTCCATCA 406 Query 301 AGACATTCTTGATGCAGCTCTTTGAGAAATGTGGAAACACTGATGTTGAAGGTGTTGACT 360 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 407 AGACCTTCTTGATGCAGCTCTTTGAGAAATGTGGAAACACTGATGTCGAAGGTGTTGACT 466 Query 361 CGACCAATGCTTGCTATGGTGGAACTGCGGCTTTGTTAAACTGTGTCAATTGGGTTGAGA 420 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 467 CGACCAATGCTTGCTATGGTGGAACTGCAGCTTTGTTAAACTGTGTCAATTGGGTTGAGA 526 Query 421 GTAACTCATGGGATGGACGTTATGGCCTCGTCATTTGTACTGACAGCGCGGTATATGCAG 480 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 527 GTAACTCTTGGGATGGACGTTATGGCCTCGTCATTTGTACTGACAGCGCGGTTTATGCAG 586 Query 481 AAGGACCCGCAAGGCCTACTGGAGGAGCTGCAGCGATTGCTATGTTGATAGGACCCGATG 540 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 587 AAGGACCCGCAAGGCCCACTGGAGGAGCTGCAGCGATTGCTATGTTGATAGGACCTGATG 646 Query 541 CTCCTATTGTTTTCGAAAGCAAATTGAGAGGAAGCCACATGGCTCATGTCTATGACTTTT 600 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 647 CTCCTATCGTTTTCGAAAGCAAATTGAGAGCAAGCCACATGGCTCATGTCTATGACTTTT 706 Query 601 ACAAGCCTAATCTTGCTAGCGAGTACCCGGTTGTTGATGGTAAGCTTTCACAGACTTGCT 660 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 707 ACAAGCCCAATCTTGCTAGCGAGTACCCGGTTGTTGATGGTAAGCTTTCACAGACTTGCT 766 Query 661 ACCTTATGGCTCTTGATTCTTGCTATAAACATTTATGCAACAAGTTCAAGAAAATCGAGG 720 |||| ||||||||||| || ||||||||||||||||||||||||||| |||| ||||||| Sbjct 767 ACCTCATGGCTCTTGACTCCTGCTATAAACATTTATGCAACAAGTTCGAGAAGATCGAGG 826 Query 721 GCAAAGAGTTTTCCATCAATGATGCTGATTACTTTGTTTTCCATTCTCCATACAATAAAC 780 |||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||| Sbjct 827 GCAAAGAGTTCTCCATAAATGATGCTGATTACATTGTTTTCCATTCTCCATACAATAAAC 886 Query 781 TTGTACAGAAAAGCTTTGCTCGTCTCTTGTACAACGACTTCTTGAGAAACGCAAGCTCCA 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 887 TTGTACAGAAAAGCTTTGCTCGTCTCTTGTACAACGACTTCTTGAGAAACGCAAGCTCCA 946 Query 841 TTGACGAGGCTGCCAAAGAAAAGTTCACCCCTTATTCATCTTTGTCCCTCGATGAGAGTT 900 |||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||| Sbjct 947 TTGACGAGGCTGCCAAAGAAAAGTTCACCCCTTATTCATCTTTGACCCTTGACGAGAGTT 1006 Query 901 ACCAAAGCCGTGATCTTGAAAAGGTGTCACAACAAATTGCGAAACCGTTTTATGATGCCA 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1007 ACCAAAGCCGTGATCTTGAAAAGGTGTCACAACAAATTGCGAAACCGTTTTATGATGCTA 1066 Query 961 AAGTGCAACCGACGACTTTAATACCAAAGGAAGTCGGTAACATGTACACTGCTTCTCTCT 1020 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1067 AAGTGCAACCAACGACTTTAATACCAAAGGAAGTCGGTAACATGTACACTGCTTCTCTCT 1126 Query 1021 ACGCTGCATTTGCTTCCCTCATCCACAATAAACACAACGATTTGGCGGGAAAGCGGGTGG 1080 |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 1127 ACGCTGCATTTGCTTCCCTCATCCACAAGAAACACAATGATTTGGCGGGAAAGCGGGTGG 1186 Query 1081 TTATGTTCTCATATGGTAGTGGCTCAACAGCAACAATGTTCTCATTACGCGTCAGCGACA 1140 |||||||||| ||||| ||||||||||| ||||||||||||||||||||| ||| ||||| Sbjct 1187 TTATGTTCTCTTATGGAAGTGGCTCAACCGCAACAATGTTCTCATTACGCCTCAACGACA 1246 Query 1141 ATCAGCCTCCTTTCAGCATTTCAAACATCGCATCTGTAATGGATGTTGGCGGTAAATTGA 1200 || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1247 ATAAGCCTCCTTTCAGCATTTCAAACATTGCATCTGTAATGGATGTTGGCGGTAAATTGA 1306 Query 1201 AGGCTAGACATGAGTATGCACCTGAGAAGTTTGTGGAGACAATGAAGCTAATGGAACATA 1260 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1307 AAGCTAGACATGAGTATGCACCTGAGAAGTTTGTGGAGACAATGAAGCTAATGGAACATA 1366 Query 1261 GATATGGAGCCAAGGACTTTGTGACAAGCAAGGAGGGTATAATAGACCTTTTGGCACCGG 1320 | |||||||| |||||||||||||||| |||||||||||| ||||| ||||||||||||| Sbjct 1367 GGTATGGAGCAAAGGACTTTGTGACAACCAAGGAGGGTATTATAGATCTTTTGGCACCGG 1426 Query 1321 GAACTTATTATCTGAAAGAGGTTGATTCCTTGTACCGGAGATTCTATGGCAAGAAAGGTG 1380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1427 GAACTTATTATCTGAAAGAGGTTGATTCCTTGTACCGGAGATTCTATGGCAAGAAAGGTG 1486 Query 1381 ATGATGGATCCATAGCCAATGGACACTGATTCTTGAAA-GGAACAAATCA 1429 | |||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 1487 AAGATGGATCTGTAGCCAATGGACACTGATTCTTGAAAAGGAACAAATCA 1536 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70431364635 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5