BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943069
Length=1429
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11820.2 | Symbols: MVA1, FKP1 | hydroxymethylglutaryl-CoA s... 2357 0.0
> AT4G11820.2 | Symbols: MVA1, FKP1 | hydroxymethylglutaryl-CoA
synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme
A synthase | chr4:7108915-7112030 REVERSE LENGTH=1724
Length=1724
Score = 2357 bits (1276), Expect = 0.0
Identities = 1379/1430 (96%), Gaps = 2/1430 (0%)
Strand=Plus/Plus
Query 1 TTCTTTTCGTTTTCATCGAAACAATGGCGAAGAACGTTGGGATTTTGGCTATGGATATCT 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 108 TTC-TTTCGTTTTCATCGAAACAATGGCGAAGAACGTTGGGATTTTGGCTATGGATATCT 166
Query 61 ATTTCCCTCCCACTTGTGTTCAACAGGAAGCATTGGAAGCCCATGATGGAGCAAGCAAAG 120
||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 167 ATTTCCCTCCCACCTGTGTTCAACAGGAAGCTTTGGAAGCACATGATGGAGCAAGTAAAG 226
Query 121 GGAAATACACTATTGGACTTGGCCAAGATTGCTTAGCTTTTTGCACTGAGCTTGAAGATG 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 227 GGAAATACACTATTGGACTTGGCCAAGATTGTTTAGCTTTTTGCACTGAGCTTGAAGATG 286
Query 181 TTATCTCTATGAGTTTCAATGCGGTGACATCACTTTTTGAGAAGTATAAGATTGACCCTA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 TTATCTCTATGAGTTTCAATGCGGTGACATCACTTTTTGAGAAGTATAAGATTGACCCTA 346
Query 241 ACCAAATCGGGCGTCTTGAAGTAGGAAGTGAGACTGTCATTGATAAAAGCAAATCCATCA 300
||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 347 ACCAAATCGGGCGTCTTGAAGTAGGAAGTGAGACTGTTATTGACAAAAGCAAGTCCATCA 406
Query 301 AGACATTCTTGATGCAGCTCTTTGAGAAATGTGGAAACACTGATGTTGAAGGTGTTGACT 360
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 407 AGACCTTCTTGATGCAGCTCTTTGAGAAATGTGGAAACACTGATGTCGAAGGTGTTGACT 466
Query 361 CGACCAATGCTTGCTATGGTGGAACTGCGGCTTTGTTAAACTGTGTCAATTGGGTTGAGA 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 467 CGACCAATGCTTGCTATGGTGGAACTGCAGCTTTGTTAAACTGTGTCAATTGGGTTGAGA 526
Query 421 GTAACTCATGGGATGGACGTTATGGCCTCGTCATTTGTACTGACAGCGCGGTATATGCAG 480
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 527 GTAACTCTTGGGATGGACGTTATGGCCTCGTCATTTGTACTGACAGCGCGGTTTATGCAG 586
Query 481 AAGGACCCGCAAGGCCTACTGGAGGAGCTGCAGCGATTGCTATGTTGATAGGACCCGATG 540
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 587 AAGGACCCGCAAGGCCCACTGGAGGAGCTGCAGCGATTGCTATGTTGATAGGACCTGATG 646
Query 541 CTCCTATTGTTTTCGAAAGCAAATTGAGAGGAAGCCACATGGCTCATGTCTATGACTTTT 600
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 647 CTCCTATCGTTTTCGAAAGCAAATTGAGAGCAAGCCACATGGCTCATGTCTATGACTTTT 706
Query 601 ACAAGCCTAATCTTGCTAGCGAGTACCCGGTTGTTGATGGTAAGCTTTCACAGACTTGCT 660
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 ACAAGCCCAATCTTGCTAGCGAGTACCCGGTTGTTGATGGTAAGCTTTCACAGACTTGCT 766
Query 661 ACCTTATGGCTCTTGATTCTTGCTATAAACATTTATGCAACAAGTTCAAGAAAATCGAGG 720
|||| ||||||||||| || ||||||||||||||||||||||||||| |||| |||||||
Sbjct 767 ACCTCATGGCTCTTGACTCCTGCTATAAACATTTATGCAACAAGTTCGAGAAGATCGAGG 826
Query 721 GCAAAGAGTTTTCCATCAATGATGCTGATTACTTTGTTTTCCATTCTCCATACAATAAAC 780
|||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 827 GCAAAGAGTTCTCCATAAATGATGCTGATTACATTGTTTTCCATTCTCCATACAATAAAC 886
Query 781 TTGTACAGAAAAGCTTTGCTCGTCTCTTGTACAACGACTTCTTGAGAAACGCAAGCTCCA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 TTGTACAGAAAAGCTTTGCTCGTCTCTTGTACAACGACTTCTTGAGAAACGCAAGCTCCA 946
Query 841 TTGACGAGGCTGCCAAAGAAAAGTTCACCCCTTATTCATCTTTGTCCCTCGATGAGAGTT 900
|||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||
Sbjct 947 TTGACGAGGCTGCCAAAGAAAAGTTCACCCCTTATTCATCTTTGACCCTTGACGAGAGTT 1006
Query 901 ACCAAAGCCGTGATCTTGAAAAGGTGTCACAACAAATTGCGAAACCGTTTTATGATGCCA 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1007 ACCAAAGCCGTGATCTTGAAAAGGTGTCACAACAAATTGCGAAACCGTTTTATGATGCTA 1066
Query 961 AAGTGCAACCGACGACTTTAATACCAAAGGAAGTCGGTAACATGTACACTGCTTCTCTCT 1020
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 AAGTGCAACCAACGACTTTAATACCAAAGGAAGTCGGTAACATGTACACTGCTTCTCTCT 1126
Query 1021 ACGCTGCATTTGCTTCCCTCATCCACAATAAACACAACGATTTGGCGGGAAAGCGGGTGG 1080
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1127 ACGCTGCATTTGCTTCCCTCATCCACAAGAAACACAATGATTTGGCGGGAAAGCGGGTGG 1186
Query 1081 TTATGTTCTCATATGGTAGTGGCTCAACAGCAACAATGTTCTCATTACGCGTCAGCGACA 1140
|||||||||| ||||| ||||||||||| ||||||||||||||||||||| ||| |||||
Sbjct 1187 TTATGTTCTCTTATGGAAGTGGCTCAACCGCAACAATGTTCTCATTACGCCTCAACGACA 1246
Query 1141 ATCAGCCTCCTTTCAGCATTTCAAACATCGCATCTGTAATGGATGTTGGCGGTAAATTGA 1200
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1247 ATAAGCCTCCTTTCAGCATTTCAAACATTGCATCTGTAATGGATGTTGGCGGTAAATTGA 1306
Query 1201 AGGCTAGACATGAGTATGCACCTGAGAAGTTTGTGGAGACAATGAAGCTAATGGAACATA 1260
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 AAGCTAGACATGAGTATGCACCTGAGAAGTTTGTGGAGACAATGAAGCTAATGGAACATA 1366
Query 1261 GATATGGAGCCAAGGACTTTGTGACAAGCAAGGAGGGTATAATAGACCTTTTGGCACCGG 1320
| |||||||| |||||||||||||||| |||||||||||| ||||| |||||||||||||
Sbjct 1367 GGTATGGAGCAAAGGACTTTGTGACAACCAAGGAGGGTATTATAGATCTTTTGGCACCGG 1426
Query 1321 GAACTTATTATCTGAAAGAGGTTGATTCCTTGTACCGGAGATTCTATGGCAAGAAAGGTG 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 GAACTTATTATCTGAAAGAGGTTGATTCCTTGTACCGGAGATTCTATGGCAAGAAAGGTG 1486
Query 1381 ATGATGGATCCATAGCCAATGGACACTGATTCTTGAAA-GGAACAAATCA 1429
| |||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1487 AAGATGGATCTGTAGCCAATGGACACTGATTCTTGAAAAGGAACAAATCA 1536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70431364635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5