BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943082
Length=1465
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11920.1 | Symbols: CCS52A2, FZR1 | cell cycle switch protei... 2331 0.0
AT4G22910.1 | Symbols: FZR2, CCS52A1 | FIZZY-related 2 | chr4:1... 1122 0.0
> AT4G11920.1 | Symbols: CCS52A2, FZR1 | cell cycle switch protein
52 A2 | chr4:7160276-7163382 REVERSE LENGTH=1895
Length=1895
Score = 2331 bits (1262), Expect = 0.0
Identities = 1393/1457 (96%), Gaps = 5/1457 (0%)
Strand=Plus/Plus
Query 1 GTAAGAGGTTGAAATCAACCATGGAAGAAGATGAATCAACAACACCGAAGAAGAAGACAG 60
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 106 GTAAGAGATTGAAATCAAACATGGAAGAAGATGAATCAACAACACCGAAGAAGAAGTCAG 165
Query 61 ATTCTCAGCTGAATCTTCCACCGTCGATGAATCGACCGACGGTCTCACTTGAGTCACGAA 120
|||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 166 ATTCTCAGCTGAATCTTCCACCGTCGATGAATCGTCCGACGGTGTCACTCGAGTCACGAA 225
Query 121 TCAACCGTTTAATTGATTCAAATCATTATCACTCTCCTTCTAAACCTATTTACTCAGATA 180
||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 226 TCAACCGTTTAATCGATTCGAATCATTATCACTCTCCTTCGAAACCTATTTACTCAGATA 285
Query 181 GGTTTATTCCAAGTAGATCTGGTTCCAATTTCGCGCTTTTCGATTTGGCATCTTCTTCGC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 GGTTTATTCCAAGTAGATCTGGTTCCAATTTCGCGCTTTTCGATTTGGCATCTTCTTCGC 345
Query 241 CG---AAGAAAGATGGGAAAGAAGATGGGGCTGGTTCTTATGCGAGTCTTTTGAAAACGG 297
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 CGAATAAGAAAGATGGGAAAGAAGATGGGGCTGGTTCTTATGCGAGTCTTTTGAAAACGG 405
Query 298 CGCTTTTTGGTCCGGTGACACCGGAGAAGAGTGATGTTGTTAATGGGTTTTCTCCGTCGA 357
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 406 CGCTTTTTGGTCCGGTGACGCCGGAGAAAAGTGATGTTGTTAATGGGTTTTCTCCGTCGG 465
Query 358 GGAATATTTTTAGGTTTAAGACGGAAACGCAGAGGTCTTTGAACTTGTATCCGCCTTTTG 417
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 466 GGAATATTTTTAGGTTTAAGACGGAAACGCAGAGGTCTTTGAATTTGTATCCGCCTTTTG 525
Query 418 GTTCTGATGTGGTGACTGGTGTTAGCCCTAGTCCTGCTAAGTCGCCGAGGAAGATTCTTA 477
|||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 526 ATTCTGATGTGGTTAGTGGTGTTAGCCCTAGTCCTGTTAAGTCGCCGAGGAAGATTCTTA 585
Query 478 GGTCTCCTTATAAGGTATTGGATGCGCCGGCTCTGCAAGATGATTTTTACTTGAATCTCG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 GGTCTCCTTATAAGGTATTGGATGCGCCGGCTCTGCAAGATGATTTTTACTTGAATCTCG 645
Query 538 TGGATTGGTCGGCACAAAATGTTCTTGCAGTGGGATTAGGGAACTGCGTGTATTTGTGGA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 TGGATTGGTCGGCACAAAATGTTCTTGCAGTGGGATTAGGGAACTGCGTGTATTTGTGGA 705
Query 598 ATGCTTGTAGTAGCAACGTAACTAAGTTATGCGATCTTGGGGTTGATGAAAGC-GTTTGC 656
|||||||||||||||| |||||||||||||||||||||||||| ||||||| | ||||||
Sbjct 706 ATGCTTGTAGTAGCAAGGTAACTAAGTTATGCGATCTTGGGGTCGATGAAA-CTGTTTGC 764
Query 657 TCAGTTGGTTGGGCACTACGTGGAACACATTTGGCGATTGGAACTAGTAGTGGAACAGTA 716
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 765 TCAGTTGGTTGGGCACTACGTGGAACACATTTGGCTATTGGAACTAGTAGCGGAACAGTA 824
Query 717 CAGATCTGGGATGTGTTACGATGCAATAGGATAAGAACAATGGAAGGTCATCGTCTAAGA 776
||||| |||||||||||||||||||| | || |||||||||||||||||||| ||||||
Sbjct 825 CAGATATGGGATGTGTTACGATGCAAGAATATTAGAACAATGGAAGGTCATCGGCTAAGA 884
Query 777 GTTGGAGCCCTGGCATGGAGTTCATCTGTACTGTCTTCAGGTAGCAGAGACAAGAGCATA 836
||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 885 GTTGGAGCCTTGGCATGGAGCTCATCTGTTCTGTCTTCAGGTAGTAGAGACAAGAGCATA 944
Query 837 CTTCAGAGAGACATTCGGACTCAAGAAGATCATGTCAGTAAGCTAAAAGGTCACAAATCC 896
||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct 945 CTTCAGAGAGACATTCGTACTCAAGAAGATCATGTCAGTAAACTTAAAGGTCACAAATCC 1004
Query 897 GAAATATGTGGACTCAAATGGTCTTTTGACAATCGCGAGCTAGCATCAGGTGGAAATGAC 956
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1005 GAAATCTGTGGACTCAAATGGTCTTCGGACAATCGCGAGCTAGCATCAGGTGGAAACGAC 1064
Query 957 AATAAGCTTTTTGTATGGAACCAACATTCAACACAACCGGTTTTGAGATACTGTGAACAC 1016
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1065 AATAAGCTGTTTGTATGGAACCAACATTCAACACAACCGGTTTTGAGATTCTGTGAACAC 1124
Query 1017 GCCGCAGCAGTGAAAGCCATTGCATGGTCACCACATCATCATGGACTTCTTGCTTCCGGT 1076
||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||| |||
Sbjct 1125 GCCGCAGCAGTGAAAGCCATTGCGTGGTCTCCACATCATTTTGGACTTCTTGCTTCTGGT 1184
Query 1077 GGTGGCACTGCTGATAGATGTATCCGTTTCTGGAACACCACGACAAACACTCATTTAAGT 1136
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1185 GGTGGCACTGCTGATAGATGTATCCGTTTCTGGAACACAACGACAAACACTCATTTAAAT 1244
Query 1137 TGCATAGACACCAACAGCCAGGTGTGTAATTTGGTATGGTCTAAGAACGTGAATGAGCTT 1196
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 TGCGTAGATACCAACAGCCAGGTGTGTAATTTGGTATGGTCTAAGAACGTGAATGAGCTT 1304
Query 1197 GTGAGCACGCACGGATATTCCCAGAACCAAATCATCGTCTGGAAATATCCAACCATGTCT 1256
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 GTGAGCACACACGGGTATTCCCAGAACCAAATCATCGTCTGGAAATATCCAACCATGTCT 1364
Query 1257 AAATTGGCAACTCTCACGGGTCACACGTACCGCGTTCTGTACCTTGCGGTGTCACCTGAT 1316
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1365 AAATTGGCAACTCTCACTGGTCACTCGTACCGCGTTCTGTACCTTGCGGTGTCACCGGAT 1424
Query 1317 GGACAGGCGATTGTGACAGGAGCAGGAGATGAAACCTTGCGATTCTGGAATGTCTTCCCT 1376
|||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1425 GGACAGACAATTGTGACAGGAGCAGGAGATGAAACCTTGAGATTCTGGAATGTCTTCCCT 1484
Query 1377 TCTCCGAAATCTCAGAGCAGAGAGAGCGAAATCGGGGCATTATCTTTTGGTAGAACAACA 1436
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1485 TCTCCGAAATCTCAGAGCAGGGAGAGCGAAATCGGGGCATTATCTTTTGGTAGAACAACA 1544
Query 1437 ATCCGGTGAAATCTTGA 1453
||||||||| |||||||
Sbjct 1545 ATCCGGTGACATCTTGA 1561
> AT4G22910.1 | Symbols: FZR2, CCS52A1 | FIZZY-related 2 | chr4:12012677-12016011
FORWARD LENGTH=1866
Length=1866
Score = 1122 bits (607), Expect = 0.0
Identities = 1150/1405 (82%), Gaps = 65/1405 (5%)
Strand=Plus/Plus
Query 81 CCGTCGATGAAT-CGACCGACGGTCTCACTTGAGTCACGAATCAACCGTTTAATTGATTC 139
||| |||||||| | ||| ||| |||||||||||||||||||| || ||||| || |
Sbjct 139 CCGGCGATGAATAC-TCCGGTGGTTTCACTTGAGTCACGAATCAATCGATTAATCAATGC 197
Query 140 AAATC-AT-T--ATCA-C-TCTCC-T--T--CTA--AA--CCTATTTACTCAGATAGGTT 184
|||| || | |||| | || || | | ||| || |||| ||||| ||||| ||
Sbjct 198 TAATCAATCTCAATCACCATCACCATCATCACTATCAAGGTCTATATACTCTGATAGATT 257
Query 185 TATTCCAAGTAGATCTGGTTCCAATTTCGCGCTTTTCGATTTGGCATCTTCTTCGCCGAA 244
||| || |||||||| || ||||||||||| ||||||||| | |||| |||| || |
Sbjct 258 TATCCCCAGTAGATCCGGATCCAATTTCGCTCTTTTCGATCT---ATCTCCTTCTCC-TA 313
Query 245 G-AAAGATGGGAAAGAAGATGGGGCTGGTTCTTATGCGAGTCTTTTGAAAACGGCGCTTT 303
| |||||||| || |||||||| ||||| ||||| || | ||| ||| ||||| | |
Sbjct 314 GTAAAGATGGTAAGGAAGATGGAGCTGGCTCTTACGCTACTCTGTTGCGTGCGGCGATGT 373
Query 304 TTGGTCCGGTGACACCGGAGAAGAGTGATGTTGTTAATGGGTTTTCTCCGTCGAGGAATA 363
||||||| | ||| |||||||||| || | | ||| |||||||||| | || |||||||
Sbjct 374 TTGGTCCTGAGACGCCGGAGAAGA--GA-GATATTACTGGGTTTTCTTCTTCCAGGAATA 430
Query 364 TTTTTAGGTTTAAGACGGAAACGCAGAGGTCTTTGAACTT-GTATCCGCCTTTTGGT-TC 421
||||||||||||||||||| || || |||||||||| || || | | ||||||||| |
Sbjct 431 TTTTTAGGTTTAAGACGGAGACTCATCGGTCTTTGAA-TTCGTTTTCTCCTTTTGGTGT- 488
Query 422 TGATG-TG-GT-GACTGGTGTTAGC-CCTA---GTCCTGCT-AAGTCGCCGAGG-AAGAT 472
||||| || | |||||||| | | || |||||| | ||| | || ||| ||| |
Sbjct 489 TGATGATGATTCTCCTGGTGTT-TCTCATAGTGGTCCTGTTAAAG-CTCCCAGGAAAG-T 545
Query 473 TCTTAGGTCTCCTTATAAGGTATTGGATGCGCCGG-CTCTGCAAGATGATTTTTACT-TG 530
| | || || ||||||||||||||||| |||| || |||||||||||||||| | ||
Sbjct 546 GCCGCGATCGCCGTATAAGGTATTGGATGCACCGGCCT-TGCAAGATGATTTTTA-TCTG 603
Query 531 AATCTCGTGGATTGGTCGGCACAAAATGTTCTTGCAGTGGGATTAGGGAACTGCGTGTAT 590
||||| ||||||||||| |||||||||||||| ||||||||| |||||||||| ||||||
Sbjct 604 AATCTTGTGGATTGGTCTGCACAAAATGTTCTAGCAGTGGGACTAGGGAACTGTGTGTAT 663
Query 591 TTGTGGAATGCTTGTAGTAGCAACGTAACTAAGTTATGCGATCTTGGGGTTGATGAAAGC 650
|| |||||||||||||| ||||| || ||||||||||| ||||| || | ||| || ||
Sbjct 664 TTATGGAATGCTTGTAGCAGCAAGGTTACTAAGTTATGTGATCTCGGAGCTGAGGATAGT 723
Query 651 GTTTGCTCAGTTGGTTGGGCACTACGTGGAACACATTTGGC-GATTGGAACTAGTA--GT 707
||||||||||| |||||||| |||||||||| ||| |||| | |||||||||||| |
Sbjct 724 GTTTGCTCAGTGGGTTGGGCGTTACGTGGAACTCATCTGGCTG-TTGGAACTAGTACCG- 781
Query 708 GGAACAGTACAGATCTGGGATGTGTTACGATGCAATAGGATAAGAACAATGGAAGGTCAT 767
|||| ||| ||||| ||||||| || ||| ||||| || | |||||||||||||||||||
Sbjct 782 GGAA-AGTTCAGATATGGGATGCGTCACGCTGCAAGAGAACAAGAACAATGGAAGGTCAT 840
Query 768 CGTCTAAGAGTTGGAGCCCTGGCATGGAGTTCATCTGTACTGTCTTCAGGTAGCAGAGAC 827
||||||||||||||||||||||||||| ||||||| || ||||| || ||||||||||||
Sbjct 841 CGTCTAAGAGTTGGAGCCCTGGCATGGGGTTCATCGGTTCTGTCATCTGGTAGCAGAGAC 900
Query 828 AAGAGCATACTTCAGAGAGACATTCGGACTCAAGAAGATCATGTCAGTAAGCTAAAAGGT 887
||||| || |||||||||||||| || ||||||||||||||||||||| | ||||
Sbjct 901 AAGAGTATTCTTCAGAGAGACATAAGGTGTCAAGAAGATCATGTCAGTAAATTGGCAGGT 960
Query 888 CACAAATCCGAAATATGTGGACTCAAATGGTCTTTTGACAATC-GCGAGCTAGCATCAGG 946
|| ||||| || |||| |||||||| ||||||| |||||| | | ||||||||||| ||
Sbjct 961 CATAAATCTGAGGTATGCGGACTCAAGTGGTCTTATGACAA-CAGAGAGCTAGCATCTGG 1019
Query 947 TGGAAATGACAATAAGCTTTTTGTATGGAACCAACATTCAACACAACCGGTTTTGAGATA 1006
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1020 TGGAAACGACAATAGGCTTTTTGTATGGAACCAACATTCAACACAACCGGTTTTGAAATA 1079
Query 1007 CT-GTGAACACGCCGCAGCAGTGAAAGCCATTGCATGGTCACCACATCATCATGGACTTC 1065
| |||||||| | ||||| || ||||||||||| ||||| || ||| |||||| ||||
Sbjct 1080 -TAGTGAACACACTGCAGCTGTTAAAGCCATTGCTTGGTCTCCTCATGTTCATGGGCTTC 1138
Query 1066 TTGCTTCCGGTGGTGGCACTGCTGATAGATGTATCCGTTTCTGGAACACCACGACAAACA 1125
||||||| |||||||| |||||||||||||| || ||||| ||||| || || || || |
Sbjct 1139 TTGCTTCTGGTGGTGGTACTGCTGATAGATGCATACGTTTTTGGAATACAACCACGAATA 1198
Query 1126 CTCATTTAAGTTGCATAGACACCAACAGCCAGGTGTGTAATTTGG-TATGGTCTAAGAAC 1184
|||||||||||| |||||| || ||| ||||| || ||| | | | ||||||||||||
Sbjct 1199 CTCATTTAAGTTCCATAGATACTTGCAGTCAGGTATGCAATCTAGCT-TGGTCTAAGAAC 1257
Query 1185 GTGAATGAGCTTGTGAGCACGCACGGATATTCCCAGAACCAAATCATCGTCTGGAAATAT 1244
|| || |||||||| ||||| |||||||| || |||||||||||||| |||||||||||
Sbjct 1258 GTAAACGAGCTTGTTAGCACACACGGATACTCTCAGAACCAAATCATTGTCTGGAAATAC 1317
Query 1245 CCAACCATGTCTAAA-TTGGCAACTCTCACGGGTCACACGTACCGCGTTCTG-TACCTTG 1302
||||||||||| ||| ||| | ||||| || |||||||| ||||| || || |||||||
Sbjct 1318 CCAACCATGTCCAAAATTG-CTACTCTAACCGGTCACACATACCGAGT-CTTATACCTTG 1375
Query 1303 CGGTGTCACCTGATGGACAGGCGATTGTGACAGGAGCAGGAGATGAAACCTTGCGATTCT 1362
|||| ||||| ||||||||| ||||||| ||||||||||||||||||||||| | ||||
Sbjct 1376 CGGTTTCACCCGATGGACAGACGATTGTAACAGGAGCAGGAGATGAAACCTTAAGGTTCT 1435
Query 1363 GGAATGTCTTCCCTTCTCCGAAATCTCAGAGCA-GAGAGAGCGAAATCGGGGCAT-TATC 1420
||||||| |||||||| || |||||||||| || | || || ||||||||| | | | ||
Sbjct 1436 GGAATGTTTTCCCTTCCCCAAAATCTCAGAACACG-GATAGTGAAATCGGGTCGTCTTTC 1494
Query 1421 TTTTGGTAGAACAACAATCCGGTGA 1445
||| |||||||||||||| ||||||
Sbjct 1495 TTT-GGTAGAACAACAATTCGGTGA 1518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72238584255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5