BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943082 Length=1465 Score E Sequences producing significant alignments: (Bits) Value AT4G11920.1 | Symbols: CCS52A2, FZR1 | cell cycle switch protei... 2331 0.0 AT4G22910.1 | Symbols: FZR2, CCS52A1 | FIZZY-related 2 | chr4:1... 1122 0.0 > AT4G11920.1 | Symbols: CCS52A2, FZR1 | cell cycle switch protein 52 A2 | chr4:7160276-7163382 REVERSE LENGTH=1895 Length=1895 Score = 2331 bits (1262), Expect = 0.0 Identities = 1393/1457 (96%), Gaps = 5/1457 (0%) Strand=Plus/Plus Query 1 GTAAGAGGTTGAAATCAACCATGGAAGAAGATGAATCAACAACACCGAAGAAGAAGACAG 60 ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||| Sbjct 106 GTAAGAGATTGAAATCAAACATGGAAGAAGATGAATCAACAACACCGAAGAAGAAGTCAG 165 Query 61 ATTCTCAGCTGAATCTTCCACCGTCGATGAATCGACCGACGGTCTCACTTGAGTCACGAA 120 |||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| Sbjct 166 ATTCTCAGCTGAATCTTCCACCGTCGATGAATCGTCCGACGGTGTCACTCGAGTCACGAA 225 Query 121 TCAACCGTTTAATTGATTCAAATCATTATCACTCTCCTTCTAAACCTATTTACTCAGATA 180 ||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 226 TCAACCGTTTAATCGATTCGAATCATTATCACTCTCCTTCGAAACCTATTTACTCAGATA 285 Query 181 GGTTTATTCCAAGTAGATCTGGTTCCAATTTCGCGCTTTTCGATTTGGCATCTTCTTCGC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 286 GGTTTATTCCAAGTAGATCTGGTTCCAATTTCGCGCTTTTCGATTTGGCATCTTCTTCGC 345 Query 241 CG---AAGAAAGATGGGAAAGAAGATGGGGCTGGTTCTTATGCGAGTCTTTTGAAAACGG 297 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 346 CGAATAAGAAAGATGGGAAAGAAGATGGGGCTGGTTCTTATGCGAGTCTTTTGAAAACGG 405 Query 298 CGCTTTTTGGTCCGGTGACACCGGAGAAGAGTGATGTTGTTAATGGGTTTTCTCCGTCGA 357 ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 406 CGCTTTTTGGTCCGGTGACGCCGGAGAAAAGTGATGTTGTTAATGGGTTTTCTCCGTCGG 465 Query 358 GGAATATTTTTAGGTTTAAGACGGAAACGCAGAGGTCTTTGAACTTGTATCCGCCTTTTG 417 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 466 GGAATATTTTTAGGTTTAAGACGGAAACGCAGAGGTCTTTGAATTTGTATCCGCCTTTTG 525 Query 418 GTTCTGATGTGGTGACTGGTGTTAGCCCTAGTCCTGCTAAGTCGCCGAGGAAGATTCTTA 477 |||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 526 ATTCTGATGTGGTTAGTGGTGTTAGCCCTAGTCCTGTTAAGTCGCCGAGGAAGATTCTTA 585 Query 478 GGTCTCCTTATAAGGTATTGGATGCGCCGGCTCTGCAAGATGATTTTTACTTGAATCTCG 537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 586 GGTCTCCTTATAAGGTATTGGATGCGCCGGCTCTGCAAGATGATTTTTACTTGAATCTCG 645 Query 538 TGGATTGGTCGGCACAAAATGTTCTTGCAGTGGGATTAGGGAACTGCGTGTATTTGTGGA 597 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 646 TGGATTGGTCGGCACAAAATGTTCTTGCAGTGGGATTAGGGAACTGCGTGTATTTGTGGA 705 Query 598 ATGCTTGTAGTAGCAACGTAACTAAGTTATGCGATCTTGGGGTTGATGAAAGC-GTTTGC 656 |||||||||||||||| |||||||||||||||||||||||||| ||||||| | |||||| Sbjct 706 ATGCTTGTAGTAGCAAGGTAACTAAGTTATGCGATCTTGGGGTCGATGAAA-CTGTTTGC 764 Query 657 TCAGTTGGTTGGGCACTACGTGGAACACATTTGGCGATTGGAACTAGTAGTGGAACAGTA 716 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 765 TCAGTTGGTTGGGCACTACGTGGAACACATTTGGCTATTGGAACTAGTAGCGGAACAGTA 824 Query 717 CAGATCTGGGATGTGTTACGATGCAATAGGATAAGAACAATGGAAGGTCATCGTCTAAGA 776 ||||| |||||||||||||||||||| | || |||||||||||||||||||| |||||| Sbjct 825 CAGATATGGGATGTGTTACGATGCAAGAATATTAGAACAATGGAAGGTCATCGGCTAAGA 884 Query 777 GTTGGAGCCCTGGCATGGAGTTCATCTGTACTGTCTTCAGGTAGCAGAGACAAGAGCATA 836 ||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||| Sbjct 885 GTTGGAGCCTTGGCATGGAGCTCATCTGTTCTGTCTTCAGGTAGTAGAGACAAGAGCATA 944 Query 837 CTTCAGAGAGACATTCGGACTCAAGAAGATCATGTCAGTAAGCTAAAAGGTCACAAATCC 896 ||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||| Sbjct 945 CTTCAGAGAGACATTCGTACTCAAGAAGATCATGTCAGTAAACTTAAAGGTCACAAATCC 1004 Query 897 GAAATATGTGGACTCAAATGGTCTTTTGACAATCGCGAGCTAGCATCAGGTGGAAATGAC 956 ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 1005 GAAATCTGTGGACTCAAATGGTCTTCGGACAATCGCGAGCTAGCATCAGGTGGAAACGAC 1064 Query 957 AATAAGCTTTTTGTATGGAACCAACATTCAACACAACCGGTTTTGAGATACTGTGAACAC 1016 |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1065 AATAAGCTGTTTGTATGGAACCAACATTCAACACAACCGGTTTTGAGATTCTGTGAACAC 1124 Query 1017 GCCGCAGCAGTGAAAGCCATTGCATGGTCACCACATCATCATGGACTTCTTGCTTCCGGT 1076 ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||| ||| Sbjct 1125 GCCGCAGCAGTGAAAGCCATTGCGTGGTCTCCACATCATTTTGGACTTCTTGCTTCTGGT 1184 Query 1077 GGTGGCACTGCTGATAGATGTATCCGTTTCTGGAACACCACGACAAACACTCATTTAAGT 1136 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 1185 GGTGGCACTGCTGATAGATGTATCCGTTTCTGGAACACAACGACAAACACTCATTTAAAT 1244 Query 1137 TGCATAGACACCAACAGCCAGGTGTGTAATTTGGTATGGTCTAAGAACGTGAATGAGCTT 1196 ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1245 TGCGTAGATACCAACAGCCAGGTGTGTAATTTGGTATGGTCTAAGAACGTGAATGAGCTT 1304 Query 1197 GTGAGCACGCACGGATATTCCCAGAACCAAATCATCGTCTGGAAATATCCAACCATGTCT 1256 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1305 GTGAGCACACACGGGTATTCCCAGAACCAAATCATCGTCTGGAAATATCCAACCATGTCT 1364 Query 1257 AAATTGGCAACTCTCACGGGTCACACGTACCGCGTTCTGTACCTTGCGGTGTCACCTGAT 1316 ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||| Sbjct 1365 AAATTGGCAACTCTCACTGGTCACTCGTACCGCGTTCTGTACCTTGCGGTGTCACCGGAT 1424 Query 1317 GGACAGGCGATTGTGACAGGAGCAGGAGATGAAACCTTGCGATTCTGGAATGTCTTCCCT 1376 |||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1425 GGACAGACAATTGTGACAGGAGCAGGAGATGAAACCTTGAGATTCTGGAATGTCTTCCCT 1484 Query 1377 TCTCCGAAATCTCAGAGCAGAGAGAGCGAAATCGGGGCATTATCTTTTGGTAGAACAACA 1436 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1485 TCTCCGAAATCTCAGAGCAGGGAGAGCGAAATCGGGGCATTATCTTTTGGTAGAACAACA 1544 Query 1437 ATCCGGTGAAATCTTGA 1453 ||||||||| ||||||| Sbjct 1545 ATCCGGTGACATCTTGA 1561 > AT4G22910.1 | Symbols: FZR2, CCS52A1 | FIZZY-related 2 | chr4:12012677-12016011 FORWARD LENGTH=1866 Length=1866 Score = 1122 bits (607), Expect = 0.0 Identities = 1150/1405 (82%), Gaps = 65/1405 (5%) Strand=Plus/Plus Query 81 CCGTCGATGAAT-CGACCGACGGTCTCACTTGAGTCACGAATCAACCGTTTAATTGATTC 139 ||| |||||||| | ||| ||| |||||||||||||||||||| || ||||| || | Sbjct 139 CCGGCGATGAATAC-TCCGGTGGTTTCACTTGAGTCACGAATCAATCGATTAATCAATGC 197 Query 140 AAATC-AT-T--ATCA-C-TCTCC-T--T--CTA--AA--CCTATTTACTCAGATAGGTT 184 |||| || | |||| | || || | | ||| || |||| ||||| ||||| || Sbjct 198 TAATCAATCTCAATCACCATCACCATCATCACTATCAAGGTCTATATACTCTGATAGATT 257 Query 185 TATTCCAAGTAGATCTGGTTCCAATTTCGCGCTTTTCGATTTGGCATCTTCTTCGCCGAA 244 ||| || |||||||| || ||||||||||| ||||||||| | |||| |||| || | Sbjct 258 TATCCCCAGTAGATCCGGATCCAATTTCGCTCTTTTCGATCT---ATCTCCTTCTCC-TA 313 Query 245 G-AAAGATGGGAAAGAAGATGGGGCTGGTTCTTATGCGAGTCTTTTGAAAACGGCGCTTT 303 | |||||||| || |||||||| ||||| ||||| || | ||| ||| ||||| | | Sbjct 314 GTAAAGATGGTAAGGAAGATGGAGCTGGCTCTTACGCTACTCTGTTGCGTGCGGCGATGT 373 Query 304 TTGGTCCGGTGACACCGGAGAAGAGTGATGTTGTTAATGGGTTTTCTCCGTCGAGGAATA 363 ||||||| | ||| |||||||||| || | | ||| |||||||||| | || ||||||| Sbjct 374 TTGGTCCTGAGACGCCGGAGAAGA--GA-GATATTACTGGGTTTTCTTCTTCCAGGAATA 430 Query 364 TTTTTAGGTTTAAGACGGAAACGCAGAGGTCTTTGAACTT-GTATCCGCCTTTTGGT-TC 421 ||||||||||||||||||| || || |||||||||| || || | | ||||||||| | Sbjct 431 TTTTTAGGTTTAAGACGGAGACTCATCGGTCTTTGAA-TTCGTTTTCTCCTTTTGGTGT- 488 Query 422 TGATG-TG-GT-GACTGGTGTTAGC-CCTA---GTCCTGCT-AAGTCGCCGAGG-AAGAT 472 ||||| || | |||||||| | | || |||||| | ||| | || ||| ||| | Sbjct 489 TGATGATGATTCTCCTGGTGTT-TCTCATAGTGGTCCTGTTAAAG-CTCCCAGGAAAG-T 545 Query 473 TCTTAGGTCTCCTTATAAGGTATTGGATGCGCCGG-CTCTGCAAGATGATTTTTACT-TG 530 | | || || ||||||||||||||||| |||| || |||||||||||||||| | || Sbjct 546 GCCGCGATCGCCGTATAAGGTATTGGATGCACCGGCCT-TGCAAGATGATTTTTA-TCTG 603 Query 531 AATCTCGTGGATTGGTCGGCACAAAATGTTCTTGCAGTGGGATTAGGGAACTGCGTGTAT 590 ||||| ||||||||||| |||||||||||||| ||||||||| |||||||||| |||||| Sbjct 604 AATCTTGTGGATTGGTCTGCACAAAATGTTCTAGCAGTGGGACTAGGGAACTGTGTGTAT 663 Query 591 TTGTGGAATGCTTGTAGTAGCAACGTAACTAAGTTATGCGATCTTGGGGTTGATGAAAGC 650 || |||||||||||||| ||||| || ||||||||||| ||||| || | ||| || || Sbjct 664 TTATGGAATGCTTGTAGCAGCAAGGTTACTAAGTTATGTGATCTCGGAGCTGAGGATAGT 723 Query 651 GTTTGCTCAGTTGGTTGGGCACTACGTGGAACACATTTGGC-GATTGGAACTAGTA--GT 707 ||||||||||| |||||||| |||||||||| ||| |||| | |||||||||||| | Sbjct 724 GTTTGCTCAGTGGGTTGGGCGTTACGTGGAACTCATCTGGCTG-TTGGAACTAGTACCG- 781 Query 708 GGAACAGTACAGATCTGGGATGTGTTACGATGCAATAGGATAAGAACAATGGAAGGTCAT 767 |||| ||| ||||| ||||||| || ||| ||||| || | ||||||||||||||||||| Sbjct 782 GGAA-AGTTCAGATATGGGATGCGTCACGCTGCAAGAGAACAAGAACAATGGAAGGTCAT 840 Query 768 CGTCTAAGAGTTGGAGCCCTGGCATGGAGTTCATCTGTACTGTCTTCAGGTAGCAGAGAC 827 ||||||||||||||||||||||||||| ||||||| || ||||| || |||||||||||| Sbjct 841 CGTCTAAGAGTTGGAGCCCTGGCATGGGGTTCATCGGTTCTGTCATCTGGTAGCAGAGAC 900 Query 828 AAGAGCATACTTCAGAGAGACATTCGGACTCAAGAAGATCATGTCAGTAAGCTAAAAGGT 887 ||||| || |||||||||||||| || ||||||||||||||||||||| | |||| Sbjct 901 AAGAGTATTCTTCAGAGAGACATAAGGTGTCAAGAAGATCATGTCAGTAAATTGGCAGGT 960 Query 888 CACAAATCCGAAATATGTGGACTCAAATGGTCTTTTGACAATC-GCGAGCTAGCATCAGG 946 || ||||| || |||| |||||||| ||||||| |||||| | | ||||||||||| || Sbjct 961 CATAAATCTGAGGTATGCGGACTCAAGTGGTCTTATGACAA-CAGAGAGCTAGCATCTGG 1019 Query 947 TGGAAATGACAATAAGCTTTTTGTATGGAACCAACATTCAACACAACCGGTTTTGAGATA 1006 |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1020 TGGAAACGACAATAGGCTTTTTGTATGGAACCAACATTCAACACAACCGGTTTTGAAATA 1079 Query 1007 CT-GTGAACACGCCGCAGCAGTGAAAGCCATTGCATGGTCACCACATCATCATGGACTTC 1065 | |||||||| | ||||| || ||||||||||| ||||| || ||| |||||| |||| Sbjct 1080 -TAGTGAACACACTGCAGCTGTTAAAGCCATTGCTTGGTCTCCTCATGTTCATGGGCTTC 1138 Query 1066 TTGCTTCCGGTGGTGGCACTGCTGATAGATGTATCCGTTTCTGGAACACCACGACAAACA 1125 ||||||| |||||||| |||||||||||||| || ||||| ||||| || || || || | Sbjct 1139 TTGCTTCTGGTGGTGGTACTGCTGATAGATGCATACGTTTTTGGAATACAACCACGAATA 1198 Query 1126 CTCATTTAAGTTGCATAGACACCAACAGCCAGGTGTGTAATTTGG-TATGGTCTAAGAAC 1184 |||||||||||| |||||| || ||| ||||| || ||| | | | |||||||||||| Sbjct 1199 CTCATTTAAGTTCCATAGATACTTGCAGTCAGGTATGCAATCTAGCT-TGGTCTAAGAAC 1257 Query 1185 GTGAATGAGCTTGTGAGCACGCACGGATATTCCCAGAACCAAATCATCGTCTGGAAATAT 1244 || || |||||||| ||||| |||||||| || |||||||||||||| ||||||||||| Sbjct 1258 GTAAACGAGCTTGTTAGCACACACGGATACTCTCAGAACCAAATCATTGTCTGGAAATAC 1317 Query 1245 CCAACCATGTCTAAA-TTGGCAACTCTCACGGGTCACACGTACCGCGTTCTG-TACCTTG 1302 ||||||||||| ||| ||| | ||||| || |||||||| ||||| || || ||||||| Sbjct 1318 CCAACCATGTCCAAAATTG-CTACTCTAACCGGTCACACATACCGAGT-CTTATACCTTG 1375 Query 1303 CGGTGTCACCTGATGGACAGGCGATTGTGACAGGAGCAGGAGATGAAACCTTGCGATTCT 1362 |||| ||||| ||||||||| ||||||| ||||||||||||||||||||||| | |||| Sbjct 1376 CGGTTTCACCCGATGGACAGACGATTGTAACAGGAGCAGGAGATGAAACCTTAAGGTTCT 1435 Query 1363 GGAATGTCTTCCCTTCTCCGAAATCTCAGAGCA-GAGAGAGCGAAATCGGGGCAT-TATC 1420 ||||||| |||||||| || |||||||||| || | || || ||||||||| | | | || Sbjct 1436 GGAATGTTTTCCCTTCCCCAAAATCTCAGAACACG-GATAGTGAAATCGGGTCGTCTTTC 1494 Query 1421 TTTTGGTAGAACAACAATCCGGTGA 1445 ||| |||||||||||||| |||||| Sbjct 1495 TTT-GGTAGAACAACAATTCGGTGA 1518 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72238584255 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5