BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943083
Length=842
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11930.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 785 0.0
> AT4G11930.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G11940.1);
Has 102 Blast hits to 102 proteins in 12 species: Archae -
0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 99; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:7164904-7165722
FORWARD LENGTH=819
Length=819
Score = 785 bits (425), Expect = 0.0
Identities = 641/742 (86%), Gaps = 28/742 (4%)
Strand=Plus/Plus
Query 84 GGAGTCCAAGATGTCGTGAACAAGAACAAGGTATTATTCGGTGAACGGCTAGATGA-ATT 142
||||| | ||| |||| |||| |||||||| | || || |||||||||||||| | ||
Sbjct 94 GGAGTTCGAGACATCGTCAACACGAACAAGGCAGTAATCAGTGAACGGCTAGAT-ACGTT 152
Query 143 TGAGAAAGCCGCGGCTATCTCGGCCGTTCTCACGGCCGCAGAGAATCCGCTTCCAAACGG 202
||||||||| || |||||||||| |||||| |||||||||||| |||||||| |||||
Sbjct 153 TGAGAAAGCGGCAGCTATCTCGGATGTTCTCTCGGCCGCAGAGACCCCGCTTCCCAACGG 212
Query 203 ATTGA-TGGATTGGTATGGGATGATTAGGGTGAAACCA-CCCGGACCTG-TCT-TATCGG 258
|| | |||||||| || || ||| | ||||| || || ||||| | | | || ||
Sbjct 213 GGCGACT-GATTGGTACGGCATCATTCGAATGAAA-CAGCCGGGACC-GAT-TGTAGGGG 268
Query 259 AGGACTTCGAGAAGTTGATGAATCTATTGAACTCCAGTAACAACCCTTTCCCATTTTGCC 318
||||||||||||||||||||||||| |||||||| |||||||| |||||||| |||||||
Sbjct 269 AGGACTTCGAGAAGTTGATGAATCTCTTGAACTCGAGTAACAATCCTTTCCCGTTTTGCC 328
Query 319 AGGAAGCTCGTGTGAGAGCCTCGTTAGCTTGGTCGTATCTGTCCGATCCAACCTCAAAGG 378
||||||||||||| | |||||||||||||||||||| |||||| ||||||||||| ||||
Sbjct 329 AGGAAGCTCGTGTTAAAGCCTCGTTAGCTTGGTCGTTTCTGTCTGATCCAACCTCTAAGG 388
Query 379 CGGGGTACGATAACG-CTATGTCCAACAAGGAAAACCTTGTAATCGAAGACCAAAGCGAT 437
|| ||||||||| | |||| |||| | |||| |||||||||||||||||||||| || |
Sbjct 389 CGAAGTACGATAA-GTCTATTTCCAGCGAGGACAACCTTGTAATCGAAGACCAAACCGGT 447
Query 438 GACATAACCGATGTTGGTGGTCTTTGCGGAGATGGTAGCAAAGGTGAAGTGGACACAAGA 497
||||||||||||| || | |||||||||||| |||||| ||||||||||||||||||||
Sbjct 448 GACATAACCGATGGTGTTCCTCTTTGCGGAGAGGGTAGCGAAGGTGAAGTGGACACAAGA 507
Query 498 AAACGAAAGGCGGATAGTCTCACTTGTTCTGATTTGCCAGCATCAGAGTACTTGAAAGAG 557
|||||||||||||| ||||||| || ||||||||||||||||| |||| |||||||||||
Sbjct 508 AAACGAAAGGCGGAGAGTCTCATTTTTTCTGATTTGCCAGCATTAGAGAACTTGAAAGAG 567
Query 558 TTTCAGGAGACGGAGGAGAATCCCTTGCC-GCTGGCGGAGACACAACAGGCTCCCAACAA 616
|||||||| ||||| |||| ||||||||| | ||| ||||| | || | | ||
Sbjct 568 TTTCAGGAAACGGAAGAGAGTCCCTTGCCCG-TGGAGGAGA-A-AA-A--C----AA--- 614
Query 617 TGAAGTTCCATCGAAAGACACTTCCTCTGTCCCCGAGAAACATAAAGTTGGTCCTGGACC 676
|||||||||||||||||||||||| | |||||| ||||||| ||| |||||||| |||||
Sbjct 615 TGAAGTTCCATCGAAAGACACTTCGTTTGTCCCGGAGAAACGTAACGTTGGTCCGGGACC 674
Query 677 TGACGATGAGGTTGT-GATTATTTCTGATGACGAGGATGAGGAATACGTGGGCCGAGATA 735
||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 675 TGACGATGAGGTTGTTG-TGATTTCTGATGACGAGGATGAGGAATACGTGGGCCGAGATA 733
Query 736 TTATATCAATGGCTAGAACAGCGAAAGTGCGCATAGTTGATGGAAGGAAAGTGAAATTTA 795
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 TTATCTCAATGGCTAGAACAGCGAAAGTGCGCATAGTTGATGGAAGGAAAGTGAAATTTG 793
Query 796 TTCCATTGAGGAAGAAGCAAAA 817
| ||||||||||||||||||||
Sbjct 794 TCCCATTGAGGAAGAAGCAAAA 815
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41041298099
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5