BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943083 Length=842 Score E Sequences producing significant alignments: (Bits) Value AT4G11930.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 785 0.0 > AT4G11930.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11940.1); Has 102 Blast hits to 102 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:7164904-7165722 FORWARD LENGTH=819 Length=819 Score = 785 bits (425), Expect = 0.0 Identities = 641/742 (86%), Gaps = 28/742 (4%) Strand=Plus/Plus Query 84 GGAGTCCAAGATGTCGTGAACAAGAACAAGGTATTATTCGGTGAACGGCTAGATGA-ATT 142 ||||| | ||| |||| |||| |||||||| | || || |||||||||||||| | || Sbjct 94 GGAGTTCGAGACATCGTCAACACGAACAAGGCAGTAATCAGTGAACGGCTAGAT-ACGTT 152 Query 143 TGAGAAAGCCGCGGCTATCTCGGCCGTTCTCACGGCCGCAGAGAATCCGCTTCCAAACGG 202 ||||||||| || |||||||||| |||||| |||||||||||| |||||||| ||||| Sbjct 153 TGAGAAAGCGGCAGCTATCTCGGATGTTCTCTCGGCCGCAGAGACCCCGCTTCCCAACGG 212 Query 203 ATTGA-TGGATTGGTATGGGATGATTAGGGTGAAACCA-CCCGGACCTG-TCT-TATCGG 258 || | |||||||| || || ||| | ||||| || || ||||| | | | || || Sbjct 213 GGCGACT-GATTGGTACGGCATCATTCGAATGAAA-CAGCCGGGACC-GAT-TGTAGGGG 268 Query 259 AGGACTTCGAGAAGTTGATGAATCTATTGAACTCCAGTAACAACCCTTTCCCATTTTGCC 318 ||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||| Sbjct 269 AGGACTTCGAGAAGTTGATGAATCTCTTGAACTCGAGTAACAATCCTTTCCCGTTTTGCC 328 Query 319 AGGAAGCTCGTGTGAGAGCCTCGTTAGCTTGGTCGTATCTGTCCGATCCAACCTCAAAGG 378 ||||||||||||| | |||||||||||||||||||| |||||| ||||||||||| |||| Sbjct 329 AGGAAGCTCGTGTTAAAGCCTCGTTAGCTTGGTCGTTTCTGTCTGATCCAACCTCTAAGG 388 Query 379 CGGGGTACGATAACG-CTATGTCCAACAAGGAAAACCTTGTAATCGAAGACCAAAGCGAT 437 || ||||||||| | |||| |||| | |||| |||||||||||||||||||||| || | Sbjct 389 CGAAGTACGATAA-GTCTATTTCCAGCGAGGACAACCTTGTAATCGAAGACCAAACCGGT 447 Query 438 GACATAACCGATGTTGGTGGTCTTTGCGGAGATGGTAGCAAAGGTGAAGTGGACACAAGA 497 ||||||||||||| || | |||||||||||| |||||| |||||||||||||||||||| Sbjct 448 GACATAACCGATGGTGTTCCTCTTTGCGGAGAGGGTAGCGAAGGTGAAGTGGACACAAGA 507 Query 498 AAACGAAAGGCGGATAGTCTCACTTGTTCTGATTTGCCAGCATCAGAGTACTTGAAAGAG 557 |||||||||||||| ||||||| || ||||||||||||||||| |||| ||||||||||| Sbjct 508 AAACGAAAGGCGGAGAGTCTCATTTTTTCTGATTTGCCAGCATTAGAGAACTTGAAAGAG 567 Query 558 TTTCAGGAGACGGAGGAGAATCCCTTGCC-GCTGGCGGAGACACAACAGGCTCCCAACAA 616 |||||||| ||||| |||| ||||||||| | ||| ||||| | || | | || Sbjct 568 TTTCAGGAAACGGAAGAGAGTCCCTTGCCCG-TGGAGGAGA-A-AA-A--C----AA--- 614 Query 617 TGAAGTTCCATCGAAAGACACTTCCTCTGTCCCCGAGAAACATAAAGTTGGTCCTGGACC 676 |||||||||||||||||||||||| | |||||| ||||||| ||| |||||||| ||||| Sbjct 615 TGAAGTTCCATCGAAAGACACTTCGTTTGTCCCGGAGAAACGTAACGTTGGTCCGGGACC 674 Query 677 TGACGATGAGGTTGT-GATTATTTCTGATGACGAGGATGAGGAATACGTGGGCCGAGATA 735 ||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| Sbjct 675 TGACGATGAGGTTGTTG-TGATTTCTGATGACGAGGATGAGGAATACGTGGGCCGAGATA 733 Query 736 TTATATCAATGGCTAGAACAGCGAAAGTGCGCATAGTTGATGGAAGGAAAGTGAAATTTA 795 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 734 TTATCTCAATGGCTAGAACAGCGAAAGTGCGCATAGTTGATGGAAGGAAAGTGAAATTTG 793 Query 796 TTCCATTGAGGAAGAAGCAAAA 817 | |||||||||||||||||||| Sbjct 794 TCCCATTGAGGAAGAAGCAAAA 815 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41041298099 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5