BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943085
Length=754
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11940.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 590 8e-168
> AT4G11940.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G11930.1);
Has 37 Blast hits to 37 proteins in 3 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:7168173-7168967
FORWARD LENGTH=795
Length=795
Score = 590 bits (319), Expect = 8e-168
Identities = 543/646 (84%), Gaps = 35/646 (5%)
Strand=Plus/Plus
Query 22 ATGTTTTCTAGAGAAGGTGCTTCAAAAAACCGCACAGAC-CCCGAAGATAAACCAATCCA 80
|||||||| |||| ||||||||| ||| ||||| || | ||||||||||||||||||||
Sbjct 1 ATGTTTTCCGGAGAGGGTGCTTCACAAATCCGCATAG-CTCCCGAAGATAAACCAATCCA 59
Query 81 AAGGTGCCACCAACTTCTAAAGAT-GCGTGACTTTAAGGGTGCTCGATATATCATTCAAA 139
| ||||| ||||| |||||||| | ||||||||| ||| | ||||||||||||| |||||
Sbjct 60 ATGGTGCTACCAAATTCTAAAG-TCGCGTGACTTCAAGAGCGCTCGATATATCACTCAAA 118
Query 140 TGAATAAGCTAG-TAAGCAATAAACGTGACGCTGAGTTTGAGAAAGCCCTAGTCATTTGT 198
||||| | || ||||||| | |||| | | ||||| |||||||| ||||| |||||||
Sbjct 119 TGAATTTG-AAGTTAAGCAAGACACGTCATGATGAGTATGAGAAAGGCCTAGCCATTTGT 177
Query 199 GACATCCTTATCGCTGCAGAGAACCGGCTTCCCCACGGGTTGTTGGATTGTTACGGCATG 258
|||||||| ||||| |||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 178 GACATCCTGATCGCCGCAGAGAACCGGCTTCCCAACGGGTTGTTGGATTGCTACGGCATG 237
Query 259 ATCCGGATGACCGGACCTGGACCT-GTGTTATTTGAGAACATGGAGAA-GATAATGAATC 316
|||||||||||| |||||||| || || |||| | ||||||| ||||| || | ||||||
Sbjct 238 ATCCGGATGACCAGACCTGGA-CTAGTTTTATATCAGAACATCGAGAAGGA-ATTGAATC 295
Query 317 TTTTGGAATGGGGAGACACTACTAACCCTTTCCCATTTAGACATGAAGCTTCTGAAAAAG 376
|||||| ||||||| ||| || ||||||||||||||||||||| |||||||||| |||||
Sbjct 296 TTTTGGGATGGGGAAACATTAGTAACCCTTTCCCATTTAGACAAGAAGCTTCTG-AAAAG 354
Query 377 -CCTTCTTTGCTTGGTCGCTCCTGTCCAATCCAACCATTAAGGAAATGTACGATTATGCT 435
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 355 TTCTTCTTTGCTTGGTCGCTTCTGTCCAATCCAACCATTAAGGAGATGTACGATTACGCT 414
Query 436 ATCTCGGACGAGGAT-AATCTTGAATCCCAAGGAAATGTCATTGAATGCATCAATGTAG- 493
| |||||| |||| | || |||||| ||||||||||||||| ||||| ||| ||||||
Sbjct 415 ACCTCGGATGAGG-TAAACCTTGAACCCCAAGGAAATGTCAATGAATACATGGATGTAGA 473
Query 494 --GCGGCACCCAAAGCGGTGATGGATTAGGTGGTGAGAAAAGAAAGCGAAAGACGCGTGA 551
|| ||| |||||||||| |||||||| ||| || | | | | |||
Sbjct 474 CAGCAGCAGCCAAAGCGGTTATGGATTA---GGT-AG---TG---TCCTTTG-TTC-TGA 521
Query 552 TTTGCCTGGATCAGAGTACTTGAAAGAGTTTCCGACAGCGGATGTGAATCCCTTGCCGCT 611
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 522 TTTGCCTGGATCAGAGTACTTGAAAGAGTTT------GCGGATGTGTATCCCTTGCCGCT 575
Query 612 ATCGGAGAAACGACAGGCTCCGCACAATCGGTTTCGATGGAATGAC 657
|||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 576 GGCGGAGAAAGGACAGGCTCCGCACAATCGGTTTGGATGGTATGAC 621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36620693163
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5