BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943087

Length=431
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G11930.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   270    6e-72


> AT4G11930.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G11940.1); 
Has 102 Blast hits to 102 proteins in 12 species: Archae - 
0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 99; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:7164904-7165722 
FORWARD LENGTH=819
Length=819

 Score =  270 bits (146),  Expect = 6e-72
 Identities = 257/308 (83%), Gaps = 18/308 (6%)
 Strand=Plus/Plus

Query  37   ACCAAAGCGGTGACATAACCAATGATAG-TGGTCTTTGCGGAGAGGGTAGCAAAGGTGAA  95
            |||||| ||||||||||||| ||| | | |  ||||||||||||||||||| ||||||||
Sbjct  437  ACCAAACCGGTGACATAACCGATGGT-GTTCCTCTTTGCGGAGAGGGTAGCGAAGGTGAA  495

Query  96   GTGGACACAAGAAAACGAAAGGCGGATAGTCTCAGTTGTTATGATTTGCCAGCATCAAAG  155
            |||||||||||||||||||||||||| ||||||| || || |||||||||||||| | ||
Sbjct  496  GTGGACACAAGAAAACGAAAGGCGGAGAGTCTCATTTTTTCTGATTTGCCAGCATTAGAG  555

Query  156  TACTTTAAAAAGTTTAAGGAAACGGAAGAAAATCCCTTGCC-GCCGGCGGAGAAACAACT  214
             |||| ||| ||||| ||||||||||||| | ||||||||| |  || ||||||| ||| 
Sbjct  556  AACTTGAAAGAGTTTCAGGAAACGGAAGAGAGTCCCTTGCCCGT-GGAGGAGAAA-AAC-  612

Query  215  GGCTTCCTACAATGTAGTTCCATCGAAAGACACTTCCTCTGTCCCGGAGAAA-GACAATG  273
                    | | || ||||||||||||||||||||| | ||||||||||||| |  || |
Sbjct  613  --------A-A-TGAAGTTCCATCGAAAGACACTTCGTTTGTCCCGGAGAAACGT-AACG  661

Query  274  TTGGTCCTGGACCTGACGATGAGGTTATAGTTATTTCTGATGACGATGATGATGAATACG  333
            ||||||| |||||||||||||||||| | || |||||||||||||| ||||| |||||||
Sbjct  662  TTGGTCCGGGACCTGACGATGAGGTTGTTGTGATTTCTGATGACGAGGATGAGGAATACG  721

Query  334  AGCGCCGA  341
             | |||||
Sbjct  722  TGGGCCGA  729



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20458973843


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5