BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943103
Length=776
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12060.1 | Symbols: | Double Clp-N motif protein | chr4:722... 1194 0.0
> AT4G12060.1 | Symbols: | Double Clp-N motif protein | chr4:7228007-7229941
REVERSE LENGTH=1031
Length=1031
Score = 1194 bits (646), Expect = 0.0
Identities = 737/779 (95%), Gaps = 13/779 (2%)
Strand=Plus/Plus
Query 1 ATCCAGACACATTCGCGAAAATGGCGGCTCACTCTTCTTGCAACTTTGCTTTGACGAATC 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 24 ATCCAGACACACTCGCGAAAATGGCGGCTCACTCTTCTTGCAACTTTGCTTTGACGAATC 83
Query 61 CGATTATCTCACAAATCGATTCTTTCTCTAAGCAGAAACAATCTGTTCCATTATACTTCT 120
|||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 84 CGATCATCTCACAAATCGATTCTTTCTCTAAGAAGAAACTATCTGTTCCATTATACTTCT 143
Query 121 TCTCTACAAGAAACCCTCTAAAAGCTTTGACGAATCCATGGTTAGGCGTTGTTGATTCAT 180
|||||||||| |||||| ||||||||||| ||||||||||||||||||||||
Sbjct 144 TCTCTACAAG---------AAAAGCATTGACGAATCCTTGGTTAGGCGTTGTTGATTCAT 194
Query 181 CCCTCTCTCTCACTTCTCCAGTCTCCGCTCTACAAAGTACTCGCCGAAGAAGAATCCATA 240
|||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 195 CCCTCTCTCTCACTTCTCCAGTCTCCGCTCTACAAACTAATCGCCCAAGAAGAATCCATA 254
Query 241 AATCCGTCATCTCCAGCTTACCCACCGCGAATCCAGATTTAGTGGTATCTGATGCGAAAA 300
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 255 AATCCGCCATCTCCAGCTTACCCACCGCGAATCCAGATTTAGTGGTTTCTGATGCGAAAA 314
Query 301 AGCCCAAATGGTCATGGAGAGCAATTAAATCATTTGCAATGGGAGAGCTTGAAGCTAGGA 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 315 AGCCCAAATGGTCATGGAGGGCAATTAAATCATTTGCAATGGGAGAGCTTGAAGCTAGGA 374
Query 361 AGCTCAAGTATCCAAGTACTGGAACTGAAGCACTTCTCATGGGTATTTTGATTGAAGGAA 420
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 AGCTCAAGTATCCAAATACTGGAACTGAAGCACTTCTCATGGGTATTTTGATTGAAGGAA 434
Query 421 CTAGTTTTACTTCAAAGTTTTTGCGGGCGAATAAGATAATGCTTTACAAAGTTCGTGAAG 480
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 435 CTAGTTTTACTTCAAAGTTTTTGCGGGCGAATAAGATTATGCTTTACAAAGTGCGTGAAG 494
Query 481 AAACGATCAAGTTACTAGGAAAGGCAGATATGTATTTCTTTAGCCCCGAACATCCTCCAT 540
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 495 AAACGGTCAAGTTACTAGGAAAGGCAGATATGTATTTCTTTAGCCCGGAACATCCTCCTT 554
Query 541 TAACCGAAGATGCTCAACGAGCACTTGACTCTGCTGTTGATCAGAATCGAAAAGCAGGTG 600
|||| |||||||||||| ||||||||||||||||| | |||||||||| |||||||||||
Sbjct 555 TAACTGAAGATGCTCAAAGAGCACTTGACTCTGCTCTGGATCAGAATCTAAAAGCAGGTG 614
Query 601 GTATCGGGGAAGTAATGCCAGCACATATACTACTGGGGATTTGGTCTGAAGTTGAATCTC 660
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 615 GTATCGGGGAAGTAATGCCAGCACATATACTACTTGGGATTTGGTCTGAAGTTGAATCTC 674
Query 661 CAGGTCACAAGATACTAGCAACTCTTGGTTTCACTGATGAAAAATCTAAAGAGTTAGAGT 720
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 675 CAGGTCACAAGATACTGGCAACTCTTGGTTTCACTGATGAGAAATCTAAAGAGTTAGAGT 734
Query 721 CTTTTGCCTC-GACATCTGGATTTCTAGATGAATAGTGTATTACATC--TATCATTTCT 776
|||||||||| || |||||| ||| |||||||||||| ||||||||| ||||||||||
Sbjct 735 CTTTTGCCTCTGA-ATCTGGCTTTTTAGATGAATAGTATATTACATCCATATCATTTCT 792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37725844397
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5