BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943111

Length=481
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G71490.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like s...   597    3e-170


> AT1G71490.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like 
superfamily protein | chr1:26932905-26935825 REVERSE LENGTH=2921
Length=2921

 Score =  597 bits (323),  Expect = 3e-170
 Identities = 411/453 (91%), Gaps = 8/453 (2%)
 Strand=Plus/Plus

Query  4    AAACCCACATTGAATCAATGCTGATTGAGAGTCTTTTTAAATCTCTTGGGCATTTAGCCA  63
            |||||||||||||| ||||||||| |||||||||||| ||||||||||| ||||| ||||
Sbjct  438  AAACCCACATTGAACCAATGCTGAGTGAGAGTCTTTTCAAATCTCTTGGACATTTGGCCA  497

Query  64   GCCATGGTCATTTGCACGATGCTTTCAAAACGTTTTCTCTTCTCCGTCTTCAATCTTCTT  123
            |||| |||||||||||||| ||||||||||||||||||||||| |||||||||   ||||
Sbjct  498  GCCACGGTCATTTGCACGACGCTTTCAAAACGTTTTCTCTTCTTCGTCTTCAA---TCTT  554

Query  124  CTTCTGCAGTTTCAGGTGACGTTATTTTGCATAGCGCGGCTTCCCTTTTATCCGCGTGTG  183
            ||||||||||||||| |||| |  ||||||||  ||||||||||||||||||||| || |
Sbjct  555  CTTCTGCAGTTTCAGATGACCTCGTTTTGCATTCCGCGGCTTCCCTTTTATCCGCTTGCG  614

Query  184  TTGATGTTCGTGCATTTGT-GCCGGGGCTGCAAATTCACGCGCACTGTGTTTCGTCGGGT  242
            ||||||||||||||||| | || |||| ||||| ||||||| |||||| |||||||||||
Sbjct  615  TTGATGTTCGTGCATTTTTAGCAGGGG-TGCAAGTTCACGCTCACTGTATTTCGTCGGGT  673

Query  243  GTCGAATATCACTCTGCT-TTAGTCCCAAAGCTGGTTACTTTTTACTCTGCTTTTAATCT  301
            |||||||||||||||| | |||||||||||||||||||| |||||||||||||| |||||
Sbjct  674  GTCGAATATCACTCTG-TGTTAGTCCCAAAGCTGGTTACCTTTTACTCTGCTTTCAATCT  732

Query  302  TCACAGTGTAGCTCAATCTATTATTGAGAACTCAGACATTTTGCATCCCTTACCAAGGAA  361
             |||| || ||||||||| |||||||||||||| ||||||||||||||||||||  ||||
Sbjct  733  CCACAATGAAGCTCAATCGATTATTGAGAACTCTGACATTTTGCATCCCTTACCTTGGAA  792

Query  362  TGTGCTCATTGCTTCGTATGCCAAGAACGAGCTTTTTGAGGAGGTTGTTGCTGCTTACAA  421
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  793  TGTGCTCATTGCTTCGTATGCCAAGAACGAGCTTTTTGAGGAGGTTATTGCTGCTTACAA  852

Query  422  GAGAATGGTTAGCAAGA-AATCTGACCCGATGC  453
            ||||||||| ||||||  |||| ||||||||||
Sbjct  853  GAGAATGGTGAGCAAGGGAATCCGACCCGATGC  885



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22906771032


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5