BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943112

Length=377
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G40490.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...   484    2e-136


> AT5G40490.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr5:16225376-16227709 FORWARD LENGTH=1665
Length=1665

 Score =  484 bits (262),  Expect = 2e-136
 Identities = 297/314 (95%), Gaps = 1/314 (0%)
 Strand=Plus/Plus

Query  64   GATTTGGTTTTGTGACATATGCTGATTCCTCGGTCGTCGACAAAGTTATCCAGGACAATC  123
            ||||||| ||||| ||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct  358  GATTTGGGTTTGTCACATATGCTGATTCCTCTGTGGTCGACAAAGTTATCCAAGACAATC  417

Query  124  ACATTATAATTGGGAAGCAGATTGAAATTAAGCGGACGATACCAAGAGGATCCATGCGCT  183
            ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct  418  ACATTATAATTGGCAAGCAGGTTGAAATTAAGCGGACGATACCAAGAGGATCCATGAGCT  477

Query  184  CTAACGATATCAAAACCAAGAAGATATTTGTTGGTGGAATTCCTTCTTCTGTGGATGATG  243
            |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  478  CTAACGATTTCAAAACCAAGAAGATATTTGTTGGTGGAATTCCTTCATCTGTGGATGATG  537

Query  244  ATGAGTTCAAAGAATTCTTTATGCAATTTGGAGAGCTGAAAGAACATCAGATTATGCGTG  303
            |||| ||||| || |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  538  ATGAATTCAAGGAGTTCTTTATGCAATTTGGAGAGCTGAAGGAACATCAGATTATGCGTG  597

Query  304  ATCATTCAACTGGAAGATCACGTGGCTTTGGGTTTGTTACATATGAAAAGTGAAGATATG  363
            |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  598  ATCACTCAACTGGAAGATCACGTGGCTTTGGGTTTGTTACATATGAAA-GTGAAGATATG  656

Query  364  GTTCATCATCTCTT  377
            ||| ||||||||||
Sbjct  657  GTTGATCATCTCTT  670



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17744515397


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5