BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943115
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12110.1 | Symbols: SMO1-1, ATSMO1, ATSMO1-1 | sterol-4alpha... 1524 0.0
AT4G22756.1 | Symbols: SMO1-2, ATSMO1, ATSMO1-2, SMO1 | sterol ... 839 0.0
> AT4G12110.1 | Symbols: SMO1-1, ATSMO1, ATSMO1-1 | sterol-4alpha-methyl
oxidase 1-1 | chr4:7254049-7256406 FORWARD LENGTH=1447
Length=1447
Score = 1524 bits (825), Expect = 0.0
Identities = 902/940 (96%), Gaps = 1/940 (0%)
Strand=Plus/Plus
Query 1 AACACTCACCGTGA-AAAACCATGATTCCTTACGCCACAATCGAAGAAGCTTCAATCGCA 59
|||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 128 AACACTCACCGTGAGAAAACCATGATTCCTTACGCTACAGTCGAAGAAGCTTCAATCGCA 187
Query 60 CTCGGACGAAACCTCACACGGCTCGAAACTCTGTGGTTCGATTACTCCGCCACAAAGTCC 119
|| ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 188 CTGGGACGAAACCTCACACGTCTCGAAACTCTATGGTTCGATTACTCCGCCACGAAGTCC 247
Query 120 GATTACTATCTCTACTGTCACAACATTTTGTTCTTGTTCCTCGTCTTCTCTCTCGTTCCT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 GATTACTATCTCTACTGTCACAACATTTTGTTCTTGTTCCTCGTCTTCTCTCTCGTTCCT 307
Query 180 CTCCCTCTTGTTTTCGTCGAATTGGCTCGATCTGCTTCTGGTTGGTTTAATCGGTATAAG 239
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 308 CTCCCTCTCGTTTTCGTCGAATTGGCTCGATCTGCTTCTGGTTTGTTTAATCGGTATAAG 367
Query 240 ATCCAACCTAAGGTTAATTACTCTTTATCTGATATGTTCAAATGTTACAAAGACGTCATG 299
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 ATCCAGCCTAAGGTTAATTACTCTTTATCTGATATGTTCAAATGTTACAAAGACGTCATG 427
Query 300 ACCATGTTTATCCTCGTCGTTGGTCCGTTGCAACTCGTTTCTTATCCTTCCATTCAGATG 359
|| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 428 ACGATGTTTATCCTCGTCGTTGGTCCATTGCAACTCGTTTCTTATCCTTCGATTCAGATG 487
Query 360 ATTGAGATTCGATCTGGATTACCATTACCAACAATAACAGAGATACTGTCACAGTTAGTA 419
|||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 488 ATTGAGATACGATCTGGATTACCATTACCAACAATTACAGAGATGCTGTCACAGTTAGTA 547
Query 420 GTCTACTTCTTGATAGAAGACTACACTAACTACTGGGTCCATAGATTCTTTCATAGTAAA 479
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 548 GTCTACTTCTTGATAGAAGACTACACTAACTACTGGGTACATAGATTCTTTCATAGTAAA 607
Query 480 TGGGGTTACGACAAGATTCATCGAGTTCATCACGAGTATACAGCTCCGATAGGATATGCT 539
||||| ||||| |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 608 TGGGGATACGATAAGATTCATCGAGTTCATCACGAGTACACAGCTCCTATAGGATATGCT 667
Query 540 GCTCCATATGCACATTGGGCTGAAGTTTTGCTTCTCGGAATCCCAACGTTTATGGGACCA 599
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 668 GCTCCTTATGCACATTGGGCTGAAGTTTTGCTTCTCGGAATCCCGACGTTTATGGGACCA 727
Query 600 GCTATTGCTCCTGGTCACATGATAACCTTTTGGTTGTGGATAGCTTTAAGGCAAATGGAG 659
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 728 GCTATTGCTCCTGGTCATATGATAACCTTTTGGTTGTGGATTGCTTTAAGGCAAATGGAA 787
Query 660 GCTATTGAGACTCACAGTGGATATGATTTTCCATGGAGTCCAACAAAATACATCCCTTTC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 GCTATTGAGACTCACAGTGGATATGATTTTCCATGGAGTCCAACAAAATACATCCCTTTC 847
Query 720 TACGGTGGCGCTGAGTACCACGATTATCATCACTACGTTGGAGGACAAAGCCAAAGCAAC 779
|||||||| ||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 848 TACGGTGGTGCTGAGTACCATGACTATCATCACTACGTTGGAGGACAAAGTCAAAGCAAC 907
Query 780 TTCGCTTCGGTGTTCACTTACTGTGATTACATTTATGGAACTGACAAGGGTTACCGATTC 839
|||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 908 TTCGCTTCAGTGTTCACGTACTGTGATTACATTTATGGAACTGACAAGGGTTACAGATTC 967
Query 840 CAAAAGAAGCTTCTTGAGCAGATCAAGGAGTCGTCTAAGAAGAGCAACAAGCATAACGGA 899
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 968 CAAAAGAAGCTTCTTGAGCAGATCAAGGAGTCGTCGAAGAAGAGCAACAAGCATAACGGA 1027
Query 900 GGAATCAAGTCCGATTAGTAGAAACCGGCGAAGAAGATTT 939
||||| || ||||||||||| ||||||| |||||||||||
Sbjct 1028 GGAATAAAATCCGATTAGTAAAAACCGGAGAAGAAGATTT 1067
> AT4G22756.1 | Symbols: SMO1-2, ATSMO1, ATSMO1-2, SMO1 | sterol
C4-methyl oxidase 1-2 | chr4:11954840-11956813 REVERSE LENGTH=1302
Length=1302
Score = 839 bits (454), Expect = 0.0
Identities = 740/879 (84%), Gaps = 16/879 (2%)
Strand=Plus/Plus
Query 21 ATGATTCCTTACGCCACAATCGAAGAAGCTTCAATCGCACTCGGACGAAACCTCACACGG 80
||||| || ||||| |||||||||||||| || |||||| | |||||||||||| ||
Sbjct 119 ATGATCCCATACGCAACAATCGAAGAAGCGTCGATCGCATTATCTCGAAACCTCACATGG 178
Query 81 CTCGAAACTCTGTGGTTCGATTACTCCGCCA-CAAAGTCCGATTACTATCTCTACTGTCA 139
|| || ||||| ||||||||||||||||||| |||| ||||||||||| |||||||| ||
Sbjct 179 CTAGAGACTCTCTGGTTCGATTACTCCGCCACCAAA-TCCGATTACTACCTCTACTGCCA 237
Query 140 CAACATTTTGTTCTTGTTCCTCGTCTTCTCTCTCGTTCCTCTCCCTCTTGTTTTCGTCGA 199
||||||| | ||| | |||||| ||||||||||||||||||||||||| |||||| ||||
Sbjct 238 CAACATTCTCTTCCTCTTCCTCATCTTCTCTCTCGTTCCTCTCCCTCTCGTTTTCATCGA 297
Query 200 ATTGGCTCGATCTGCTTCTGGTTGGTTTAATCGGTATAAGATCCAACCTAAGGTTAATTA 259
|| ||| ||| | || | || ||| ||||| || || |||||||| || || || |
Sbjct 298 ATCATCTCAATCCACCTCAGATTTGTTCAATCGCTACAAAATCCAACCAAAAGTGAAAAA 357
Query 260 CTCTTTATCTGAT--ATGTTCAAATGTTACAAAGACGTCATGACCATGTTTATCCTCGTC 317
||| | ||| || |||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 358 CTC-AT-TCTCATCGATGTTCAAATGTTACAAAGACGTCATGAAGATGTTCATCCTCGTC 415
Query 318 GTTGGTCCGTTGCAACTCGTTTCTTATCCTTCCATTCAGATGATTGAGATTCGATCTGGA 377
|||||||| || |||||||||||||||||||| ||||||||||||||||| ||| ||||
Sbjct 416 GTTGGTCCATTACAACTCGTTTCTTATCCTTCGATTCAGATGATTGAGATACGAAGTGGA 475
Query 378 TTACCATTACCAACAA-TAACAGAGATACT-GTCACAGTTAGTAGTCTACTTCTTGATAG 435
|||||||||||| || || ||||| | | |||||||||| || ||||||||| |||
Sbjct 476 TTACCATTACCATCATGTATG-GAGATTGTAG-CACAGTTAGTGGTTTACTTCTTGGTAG 533
Query 436 AAGACTACACTAACTACTGGGTCCATAGATTCTTTCATAGTAAATGGGGTTACGACAAGA 495
| || || ||||| |||||||| ||||||||||||||| ||||||||||||| || |||
Sbjct 534 AGGATTATACTAATTACTGGGTTCATAGATTCTTTCATTGTAAATGGGGTTATGAGAAGT 593
Query 496 TTCATCG-AGTTCATCACGAGTATACAGCTCCGATAGGATATGCTGCTCCATATGCACAT 554
|||||| | ||||||| |||||||||||||| || || ||||||||||| ||||| |||
Sbjct 594 TTCATCATA-TTCATCATGAGTATACAGCTCCTATTGGTTATGCTGCTCCTTATGCTCAT 652
Query 555 TGGGCTGAAGTTTTGCTTCTCGGAAT-CCCAACGTTTATGGGACCAGCTATTGCTCCTGG 613
|||||||| ||||||||||| || || |||| ||||| | ||||| ||||||||||||||
Sbjct 653 TGGGCTGAGGTTTTGCTTCTTGGCATTCCCA-CGTTTCTTGGACCTGCTATTGCTCCTGG 711
Query 614 TCACATGATAACCTTTTGGTTGTGGATAGCTTTAAGGCAAATGGAGGCTATTGAGACTCA 673
||| ||||| ||||||||||||||||| |||||| | || || |||||||| || |||||
Sbjct 712 TCATATGATTACCTTTTGGTTGTGGATTGCTTTACGACAGATTGAGGCTATCGAAACTCA 771
Query 674 CAGTGGATATGATTTTCCATGGAGTCCAACAAAATACATCCC-TTTCTACGGTGGCGCTG 732
|| ||||||||||| |||||| || ||||| ||||| || ||| || ||||| ||||
Sbjct 772 TAGCGGATATGATTTCCCATGGTCTCTGACAAAGTACATTCCATTT-TATGGTGGAGCTG 830
Query 733 AGTACCACGATTATCATCACTACGTTGGAGGACAAAGCCAAAGCAACTTCGCTTCGGTGT 792
|||| || ||||| |||||||||||||||||||||||||| || ||||| ||||| || |
Sbjct 831 AGTATCATGATTACCATCACTACGTTGGAGGACAAAGCCAGAGTAACTTTGCTTCAGTTT 890
Query 793 TCACTTACTGTGATTACATTTATGGAACTGACAAGGGTTACCGATTCCAAAAGAAGCTTC 852
| |||||||| |||||||| ||||||||||| || |||||||||||||| ||||||||||
Sbjct 891 TTACTTACTGCGATTACATCTATGGAACTGATAAAGGTTACCGATTCCAGAAGAAGCTTC 950
Query 853 TTGAGCAGATCAAGGAGTCGTCTAAGAAGAGCAACAAGC 891
|| ||||||| |||||| ||| ||||||||||||||||
Sbjct 951 TTCAGCAGATGAAGGAGAAGTCCAAGAAGAGCAACAAGC 989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45914010358
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5