BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943123

Length=223
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G12210.1 | Symbols:  | RING/U-box superfamily protein | chr4...   193    7e-49
  AT4G12190.1 | Symbols:  | RING/U-box superfamily protein | chr4...   161    2e-39


> AT4G12210.1 | Symbols:  | RING/U-box superfamily protein | chr4:7281308-7281919 
REVERSE LENGTH=612
Length=612

 Score =  193 bits (104),  Expect = 7e-49
 Identities = 163/191 (85%), Gaps = 5/191 (3%)
 Strand=Plus/Plus

Query  1    AGGAATTGAAGAGTTTGAAGATGGAAACAGAGTCGTGTTCCATCTACCTCGAGAATCT--  58
            |||||||||||||||||||||||||||||||||| ||||| ||||  || ||||||||  
Sbjct  422  AGGAATTGAAGAGTTTGAAGATGGAAACAGAGTCTTGTTCAATCTGTCTTGAGAATCTAG  481

Query  59   -CTCCGGTCTAAAACCTATCGACCTAACACGGATGACTTGTTCCCATGTCTTCCACAATC  117
             |||||||| |||||||| |||||| ||||| ||||||||||| ||||||||||||||||
Sbjct  482  TCTCCGGTCCAAAACCTAGCGACCTCACACGCATGACTTGTTCTCATGTCTTCCACAATC  541

Query  118  G-TGTCTCTTGGAGTTGTTCAAGCGTAAAG-CACTTGTCTGTTGTGTTTTACAGTGCTCT  175
              ||||||||||||| ||||| |||||||  ||||||||   |||||   || | |||||
Sbjct  542  CCTGTCTCTTGGAGTGGTTCATGCGTAAAAACACTTGTCCCCTGTGTCGGACGGAGCTCT  601

Query  176  AGGATCGATGA  186
            | |||||||||
Sbjct  602  ACGATCGATGA  612


> AT4G12190.1 | Symbols:  | RING/U-box superfamily protein | chr4:7278545-7278760 
REVERSE LENGTH=216
Length=216

 Score =  161 bits (87),  Expect = 2e-39
 Identities = 137/160 (86%), Gaps = 7/160 (4%)
 Strand=Plus/Plus

Query  1    AGGAATTGAAGAGTTTGAAGATGGAAACAGAGTCGTGTTCCATCTACCTCGAGAATCT--  58
            |||||||||||||||||||||||||||||||| ||||||||||||  ||||||| |||  
Sbjct  29   AGGAATTGAAGAGTTTGAAGATGGAAACAGAGCCGTGTTCCATCTGTCTCGAGAGTCTAG  88

Query  59   -CTCCGGTC-TAAAACCTATCGACCTAACACGGATGACTTGTTCCCATGTCTTCCACAAT  116
             |||||||| |||| ||||  ||| | ||||| ||||||||||| |||||||||||||||
Sbjct  89   TCTCCGGTCCTAAA-CCTAGGGACATCACACGCATGACTTGTTCTCATGTCTTCCACAAT  147

Query  117  CG-TGTCTCTTGGAGTTGTTCAAGCGTAA-AGCACTTGTC  154
             | ||||| || |||| | |||||||||| | ||||||||
Sbjct  148  GGCTGTCTTTTAGAGTGGCTCAAGCGTAAGAACACTTGTC  187



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10003282051


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5