BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943135

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G04470.1 | Symbols: PMP22 | Peroxisomal membrane 22 kDa (Mpv...   159    8e-39
  AT4G04460.1 | Symbols:  | Saposin-like aspartyl protease family...  80.5    7e-15


> AT4G04470.1 | Symbols: PMP22 | Peroxisomal membrane 22 kDa (Mpv17/PMP22) 
family protein | chr4:2227661-2229280 REVERSE LENGTH=929
Length=929

 Score =  159 bits (86),  Expect = 8e-39
 Identities = 111/122 (91%), Gaps = 5/122 (4%)
 Strand=Plus/Minus

Query  135  AATGGTATCATCTTAATACAGATTTTTATTTGGTTTCAGAGCTGTTTGTTTTGCTTTAAC  194
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  758  AATGGTATCATCTTAATACAGATTTTTATTTGGTTTCAGAGCTGTTTGATTTGCTTTAAC  699

Query  195  TTACAGAGTACTAAG--ATCATATTGAGTCC-AGGGATTTAGTTCTCT--CACGATCAAT  249
            |||||||||||||||  |||||| ||||||| | || || ||||||||  ||||||| ||
Sbjct  698  TTACAGAGTACTAAGTGATCATAATGAGTCCCAAGGCTTGAGTTCTCTGTCACGATCCAT  639

Query  250  GT  251
            ||
Sbjct  638  GT  637


> AT4G04460.1 | Symbols:  | Saposin-like aspartyl protease family 
protein | chr4:2224551-2227874 FORWARD LENGTH=1712
Length=1712

 Score = 80.5 bits (43),  Expect = 7e-15
 Identities = 43/43 (100%), Gaps = 0/43 (0%)
 Strand=Plus/Plus

Query  135   AATGGTATCATCTTAATACAGATTTTTATTTGGTTTCAGAGCT  177
             |||||||||||||||||||||||||||||||||||||||||||
Sbjct  1670  AATGGTATCATCTTAATACAGATTTTTATTTGGTTTCAGAGCT  1712



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11561582270


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5