BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943146
Length=525
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12410.1 | Symbols: | SAUR-like auxin-responsive protein fa... 708 0.0
> AT4G12410.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr4:7342956-7343590 REVERSE LENGTH=635
Length=635
Score = 708 bits (383), Expect = 0.0
Identities = 466/504 (92%), Gaps = 14/504 (3%)
Strand=Plus/Plus
Query 5 AATCTGA-TCAAACCAAGCATGAAGAGAGTCAGAGGATTCAAAATTGGACACAGATTTGT 63
||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 143 AATCTGATTAAAACCAAGCATGAAGAGAGTCAGAGGGTTCAAAATTGGACACAGATTTGT 202
Query 64 CAAAATCTTT-AAATGGATGATTCTACCAAGAAAACGTCA-ATGCCCGACCCGAATCACA 121
|||||| ||| |||| | || ||||||| ||| || |||||||||||||||||||
Sbjct 203 CAAAAT-TTTCAAAT-G--GA---TACCAAG-AAA---CAGATGCCCGACCCGAATCACA 251
Query 122 AACCCGGTTTCCGGAATCCGGTCATTAGCACGGTGTTTAAGCCGTGGAGCTAAGAGATTG 181
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 AACCCGGTTACCGGAATCCGGTCATTAGCACGGTGTTTAAGCCGTGGAGCTAAGAGATTG 311
Query 182 TGCGGTGGTGGTAAGAAGAATCCGGGTCAGAATCAGATCCGATTGGGTAAGGATCCGAAA 241
|||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 312 TGCGGTGGAAGCAAGAAGAATCCGGGTCAGAATCAGATCCGGTTGGGTAAGGATCCGAAA 371
Query 242 ACGTCGAACCGGGTTGTTCCGAGAGGACATTTGGTGGTTCACGTTGGCGAATCAGACGGT 301
| |||||||||||||||||| ||||||||||||||||||| || ||||||||||||| |
Sbjct 372 AAGTCGAACCGGGTTGTTCCTCGAGGACATTTGGTGGTTCATGTCGGCGAATCAGACGAT 431
Query 302 GACACGCGGCGAGTTGTGGTGCCAGTGATTTACTTTAATCATCCATTGTTTGGAGAATTG 361
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 432 GACACGCGGCGAGTTGTGGTGCCGGTGATTTACTTTAATCATCCATTGTTTGGAGAATTG 491
Query 362 TTGGAGCAAGCGGAGCGGGTTCATGGGTTTGATCAACCGGGTCGGATCACGATACCGTGT 421
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 492 TTGGAGCAAGCGGAGCGGGTTCATGGGTTTGATCAACCGGGTCGGATCACTATTCCTTGT 551
Query 422 CGGGTTTCGGATTTTGAGAAAGTTCAGATGAGGATCGCCGCATGGGATCATTGCCGTAGG 481
||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||||| |||
Sbjct 552 CGGGTTTCGGATTTTGAAAAAGTCCAGTTGAGGATCGCTGCATGGGATCATTGCCGCAGG 611
Query 482 AAAAGTTCGTACAAGATTATATAA 505
|||| ||| |||||||||||||||
Sbjct 612 AAAAATTCTTACAAGATTATATAA 635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25117073500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5