BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943148
Length=1806
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12420.1 | Symbols: SKU5 | Cupredoxin superfamily protein | ... 2806 0.0
AT5G48450.1 | Symbols: sks3 | SKU5 similar 3 | chr5:19632791-1... 172 8e-42
> AT4G12420.1 | Symbols: SKU5 | Cupredoxin superfamily protein
| chr4:7349662-7353074 REVERSE LENGTH=2249
Length=2249
Score = 2806 bits (1519), Expect = 0.0
Identities = 1716/1812 (95%), Gaps = 9/1812 (0%)
Strand=Plus/Plus
Query 1 TTTGCAAGAGAGAAAACAAG-AAATGGATTTGTTCAAGATCCTGCTTCTTGTGTTCTTCG 59
||||| ||||| |||| ||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 185 TTTGCGAGAGA-AAAAAAAGAAAATGGATTTGTTCAAGATCCTTCTTCTTGTGTTCTTCG 243
Query 60 TGAACATAAGTTTCTGCTTCGCTGCAGATCCTTATTCTTTCTATAACTTCGAAGTCTCCT 119
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 244 TGAACATAAGTTTCTGCTTCGCTGCAGATCCATATTCTTTCTATAACTTCGAAGTCTCTT 303
Query 120 ACATTACTGCTTCTCCACTTGGTGTTCCTCAACAGGTCATTGCTATAAATGGAAAGTTTC 179
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 304 ACATTACTGCTTCTCCTCTTGGTGTCCCTCAACAGGTCATTGCTATAAATGGAAAGTTTC 363
Query 180 CTGGTCCTACAATCAATGTTACAACCAATGAAAATCTGGTTGTTAATGTCAGAAACAAAT 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 364 CTGGTCCTACAATCAATGTTACAACCAATGAAAATCTGGTTGTTAATGTCAGAAACAAGT 423
Query 240 TGGATGAGGGACTTCTTCTTCATTGGAATGGAATCCAACAGAGACGTGTTTCATGGCAAG 299
| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 424 TAGACGAGGGACTTCTTCTTCATTGGAATGGAATCCAACAGAGACGTGTGTCATGGCAAG 483
Query 300 ATGGAGTTTTAGGAACCAATTGTCCTATTCCTCCAAAGTGGAATTGGACTTATGAGTTTC 359
||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 484 ATGGAGTTTTAGGAACCAATTGTCCAATCCCACCAAAGTGGAATTGGACTTATGAGTTTC 543
Query 360 AAGTTAAGGACCAAATTGGGAGTTTCTTCTACTTTCCTTCTCTCCATTTCCAGAAAGCTT 419
||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||| |||||
Sbjct 544 AAGTTAAAGACCAAATTGGTAGTTTCTTCTACTTTCCATCTCTACATTTCCAGAGAGCTT 603
Query 420 CTGGTGGTTTTGGCTCCTTCATTGTCAATCCTAGAGCGATTATTCCAGTCCCTTTCTCGA 479
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
Sbjct 604 CTGGTGGTTTTGGCTCCTTTGTTGTCAATCCTAGAGCTATTATTCCAGTCCCTTTCTCTA 663
Query 480 CTCCAGACGGCGATATTACCGTTACGATTGGTGATTGGTACATAAGGAACCACACGGCTT 539
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 664 CTCCAGACGGTGATATTACCGTTACCATTGGTGATTGGTACATAAGGAACCACACGGCTT 723
Query 540 TGAGGAAGGCTTTAGATGATGGTAAAGATCTTGGAATGCCCGATGGAGTTCTTATTAACG 599
||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |
Sbjct 724 TGAGGAAGGCTTTGGATGATGGTAAAGATCTTGGAATGCCTGATGGAGTTCTCATTAATG 783
Query 600 GAAAAGGACCTTACCGATACAATGACACTCTTGTTGCTGATGGGATTGATTTTGAAACAA 659
|||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 784 GAAAAGGACCTTACCGATACAATGACACGCTTGTTGCTGATGGGATCGATTTCGAAACAA 843
Query 660 TCACAGTCCATCCTGGGAAAACTTATAGACTTCGAGTGTCAAATGTGGGAATTTCGACGA 719
|||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 844 TCACAGTCCATCCTGGAAAAACTTATAGACTTCGAGTGTCGAATGTGGGAATCTCGACGA 903
Query 720 GCTTGAACTTTAGGATTCAAGGTCACAACTTAGTTCTTGCGGAATCCGAAGGATCGTACA 779
| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 904 GTTTGAACTTTAGGATTCAAGGTCACAACTTAGTTCTTGCGGAATCAGAAGGATCATACA 963
Query 780 CAGTTCAACAAAACTACACTAGCTTGGATATTCATGTTGGGCAGTCTTATTCATTCTTGG 839
|||||||||||||||| || |||||||||||||||||||| ||||||||||| |||||||
Sbjct 964 CAGTTCAACAAAACTATACAAGCTTGGATATTCATGTTGGACAGTCTTATTCTTTCTTGG 1023
Query 840 TTACAATGGATCAAAACGCGAGCTCTGATTACTATATTGTTGCGAGTGCTCGGGTTGTTA 899
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1024 TTACAATGGATCAAAACGCGAGCTCTGATTACTACATTGTCGCGAGTGCTCGGGTTGTTA 1083
Query 900 ATGAAACCATATGGAGAAGAGTTACTGGAGTTGGAATCTT-ACACTATACCAACTCTAAA 958
| |||||||||||||||||||| ||||||||||||||||| | | |||||||||||||||
Sbjct 1084 ACGAAACCATATGGAGAAGAGTCACTGGAGTTGGAATCTTGA-AGTATACCAACTCTAAA 1142
Query 959 GGAAAAGCTAAAGGTCACTTACCGCCTGGACCACTAGACGAATTCGACAAGACTTTCTCC 1018
||||||||||||||||| ||||| |||||||||| ||||||||||||||| |||||||||
Sbjct 1143 GGAAAAGCTAAAGGTCAGTTACCCCCTGGACCACAAGACGAATTCGACAAAACTTTCTCC 1202
Query 1019 ATGAATCAAGCAAGATCCATCAGATGGAATGTATCAGCAAGTGGTGCGCGTCCTAACCCG 1078
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1203 ATGAATCAAGCAAGATCCATCAGATGGAATGTATCAGCAAGTGGTGCACGTCCTAACCCG 1262
Query 1079 CAAGGCTCGTTTAAATATGGTTCAATCAATGTAACCGATGTCTACGTTCTGAGGAATATG 1138
||||| || |||||||| ||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 1263 CAAGGATCATTTAAATACGGTTCGATCAATGTAACCGATGTCTACGTTCTAAGGAACATG 1322
Query 1139 CCGCCTGTGACGATTAATGGGAAGCGAAGAACAACTCTTAATGGCATATCGTTTAAGAAT 1198
|||||||||||||||| ||||||| |||||||||| ||||||||||||||||| ||||||
Sbjct 1323 CCGCCTGTGACGATTAGTGGGAAGAGAAGAACAACGCTTAATGGCATATCGTTCAAGAAT 1382
Query 1199 CCTTCTACGCCTATTAGACTAGCCGATAAGTTTAAAGTTAAAGATGTGTATAAGCTTGAT 1258
||||| || |||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1383 CCTTCAACACCTATTAGACTAGCTGATAAGCTTAAAGTTAAAGATGTGTATAAGCTTGAT 1442
Query 1259 TTCCCTAAGAGACCTTTAACTGGACCGGCCAAAGTGGAGACTTCGATTATCAATGGCACT 1318
|||||||||||||||||||||||||| || ||||||| |||||||||||||||||| |||
Sbjct 1443 TTCCCTAAGAGACCTTTAACTGGACCAGCTAAAGTGGCGACTTCGATTATCAATGGTACT 1502
Query 1319 TATCGTGGATTCATGGAAGTCGTTCTTCAAAACAATGACACTAAGATGCAAAGCTATCAC 1378
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1503 TATCGTGGATTCATGGAAGTCGTTCTTCAGAACAATGACACTAAGATGCAAAGCTATCAC 1562
Query 1379 ATGAGTGGCTACGCCTTTTTTGTCGTCGGTATGGATTACGGAGAGTGGACAGAGAACAGT 1438
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1563 ATGAGTGGCTACGCCTTCTTTGTCGTCGGTATGGATTATGGAGAGTGGACAGAGAACAGT 1622
Query 1439 AGAGGAACATACAACAAATGGGATGGTATCGCCCGCTCCACTATTCAGGTGTATCCAGGG 1498
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1623 AGAGGAACATACAACAAATGGGATGGTATCGCGCGTTCCACTATTCAGGTGTATCCAGGG 1682
Query 1499 GCATGGTCAGCGATCTTGATATCAATGGACAATCCTGGAGCTTGGAATCTAAGAACAGAG 1558
|||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1683 GCATGGTCAGCGATATTGATATCATTAGACAATCCTGGAGCTTGGAATCTAAGAACAGAG 1742
Query 1559 AATCTTGATTCTTGGTATCTTGGACAAGAAACTTATGTTAGAGTGGTTAATCCAGACGAA 1618
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1743 AATCTTGATTCGTGGTATCTTGGACAAGAAACTTACGTTAGAGTGGTTAATCCAGACGAA 1802
Query 1619 AACAACAAAACCGAATTCGGGCACCCTGACAATGTTCTTTACTGTGGTGCTCTCAGCAAA 1678
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1803 AACAACAAAACCGAATTCGGACACCCTGACAATGTTCTTTACTGTGGTGCTCTCAGCAAA 1862
Query 1679 CTACAAAAGCCACAGAAGATTTCATCGGCGGCGTCGA-GAAGCATTGGATTCACGAGTCT 1737
|||||||||||||||||| |||||||| |||| |||| || |||||||||||||||||||
Sbjct 1863 CTACAAAAGCCACAGAAGGTTTCATCGTCGGCATCGAAGA-GCATTGGATTCACGAGTCT 1921
Query 1738 TTCAATGGTGGTAATGGCTTTGGTGATGATGATGATGATTCAGCATTGAAAT-GT-AATT 1795
||| ||||||||||||||||||||||||||||||||| |||||||||||||| || || |
Sbjct 1922 TTCTATGGTGGTAATGGCTTTGGTGATGATGATGATGCTTCAGCATTGAAATTGTTAAAT 1981
Query 1796 -TGAGGGTTTGT 1806
|||||||||||
Sbjct 1982 CTGAGGGTTTGT 1993
> AT5G48450.1 | Symbols: sks3 | SKU5 similar 3 | chr5:19632791-19635664
REVERSE LENGTH=1918
Length=1918
Score = 172 bits (93), Expect = 8e-42
Identities = 286/376 (76%), Gaps = 26/376 (7%)
Strand=Plus/Plus
Query 113 GTCTCCTACAT-TACTGCTTCTCCACTTGGTGTTCCTCAACAGGTCATTGCTATAAAT-G 170
||||| ||| | | |||||||||| || || || ||||||||| |||| |||||| |
Sbjct 155 GTCTCTTACCTCT-CTGCTTCTCCTCTCGGCACTCGTCAACAGGTAATTGGGATAAATGG 213
Query 171 GAAAGTTTCCTGGTCCTACAATCAATGTTACAACCAA-TGAAAATCTGGTTGTTAATGTC 229
| || ||||||||||| | | || || || || || || ||| | ||| | |||||
Sbjct 214 GCAA-TTTCCTGGTCCGATTCTAAACGTAACTACGAATTG-GAATGTTGTTATGAATGT- 270
Query 230 AGAA-ACA-AAT-TGGATGAGGGACTT-CTTCTT-CATTGGAATGGAATCCAACAGA-GA 283
||| | | ||| | |||||| | || |||||| || ||||||||||||||||| | ||
Sbjct 271 -GAAGA-ATAATCTTGATGAGCCA-TTGCTTCTTACA-TGGAATGGAATCCAACATAGGA 326
Query 284 CGTGTTTCATGGCAAGATGGAGTTTTAGGAACCAATTGTCCTATTCCTCCAAAG-TGGAA 342
|||||||||||||| ||||| ||||| |||||||| |||||| | | |||||
Sbjct 327 -AAAACTCATGGCAAGATGGTGTTTTGGGAACTAATTGTCCAATTCCTTC-TGGTTGGAA 384
Query 343 TTGGACTTATGAGTTTCAAGTTAAGGACCAAATTGGGAGTTTCTTCTACTTTCCTTCTCT 402
|||||||||||||||||||||||| || || ||||| |||||||| || |||||||||
Sbjct 385 TTGGACTTATGAGTTTCAAGTTAAAGATCAGATTGGTAGTTTCTTTTATTTTCCTTCTA- 443
Query 403 CCA-TTTCCAGAA-AGCTTCTGGTGGTTTTGGCTCC-TTCATTGTCAATCCTAGAGCGAT 459
| | ||| || || |||||||||||||| ||| || ||||||||| | | || ||
Sbjct 444 CAAATTTTCA-AAGAGCTTCTGGTGGTTATGGAGGGATT-ATTGTCAATAATCGCGCTAT 501
Query 460 TATTCCAGTCCCTTTC 475
||||| || ||||||
Sbjct 502 CATTCCGGTTCCTTTC 517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89356970100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5