BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943161
Length=608
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12490.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 702 0.0
AT4G12500.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 628 1e-179
AT4G12480.1 | Symbols: pEARLI 1 | Bifunctional inhibitor/lipid-... 424 7e-118
AT4G12470.1 | Symbols: AZI1 | azelaic acid induced 1 | chr4:740... 381 4e-105
> AT4G12490.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr4:7409621-7410406
REVERSE LENGTH=786
Length=786
Score = 702 bits (380), Expect = 0.0
Identities = 529/599 (88%), Gaps = 18/599 (3%)
Strand=Plus/Plus
Query 1 TCTCTCTCTCAAACACACTCAATAACAATGGCTTCAAAGAACTCAGCCTCTCTTGCTCTT 60
|||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2 TCTCTCACTCAAACATTCTCCATAACAATGGCTTCAAAGAACTCAGCCTCTCTTGCTCTT 61
Query 61 TTCTTTGCCCTCAACATCCtttttttCACCTTAACCGCTGCTACTGATTGTAGATGCAAC 120
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 62 TTCTTTGCCCTCAACATCCTTTTTTTCACCTTAACCGCTGGTACTAATTGTAGATGCAAC 121
Query 121 CCAAGTCCTAAGCAC-AAGCCGATCCCAAGTCCTAAGCCTAGGCCGGTCCCAAGTCCTTC 179
|| |||||||||| | | |||| |||||| |||| | | |||||||||||| |
Sbjct 122 CCGAGTCCTAAGC-CTAGGCCGCTCCCAAATCCT-A----A----GGTCCCAAGTCC-TA 170
Query 180 A-GTTCCAACTCCTTCAGTCCCAATTCCTTCGGTTCCAACTCCTTCAGTCCCAATTCCTT 238
| || ||||||||||| ||||||| ||| | |||||||||||||| ||||||| |||||
Sbjct 171 AGGTCCCAACTCCTTCGGTCCCAAGTCCATATGTTCCAACTCCTTCGGTCCCAAGTCCTT 230
Query 239 CGGTCCCAACTCCTTCGGTCCCAACTCCTTCGGTCCCAAATCCTTCCGTACCAACTCCCG 298
| || ||||||||||||||||||| |||||| || |||| |||| | || || || |
Sbjct 231 CCGTACCAACTCCTTCGGTCCCAAGTCCTTCCGTACCAAGTCCTAAC---CCTACGCCAG 287
Query 299 TCACACCTCCGAGCACCCCTGGCTCATCGGGAAACTGTCCCATCGATGCTCTCAGACTCG 358
||| |||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 288 TCATTCCTCCGAGAACCCCTGGTTCATCCGGAAACTGTCCTATCGATGCTCTCAGACTCG 347
Query 359 GTGTATGTGCGAATGTCCTAAGCGGTCTACTTAACGTGCAGTTGGGACAGCCATCAGCTC 418
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 348 GTGTATGTGCGAATGTGCTAAGCGGTCTACTTAACGTGCAGTTGGGACAGCCATCACCTC 407
Query 419 AGCCATGCTGCTCGCTCATCCAGGGTTTGGTTGACCTCGACGCTGCGATTTGTCTCTGCA 478
| ||||||||||| ||||| || |||||||||||||| ||||||||| |||| || ||||
Sbjct 408 AACCATGCTGCTCACTCATTCAAGGTTTGGTTGACCTTGACGCTGCGGTTTGCCTATGCA 467
Query 479 CTGCTCTTAGGGCTAACGTTCTTGGCATCAACCTTAACGTTCCCATATCTCTCAGCGTTC 538
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 468 CTGCTCTTAGGGCTAACGTTCTTGGCATCAACCTTAACGTTCCTATATCTCTCAGTGTTC 527
Query 539 TTCTCAACGTTTGTAACAGAAGGCTTCCGTCTGGTTTTCAATGTGCTTGAGCGG-TATC 596
||||||||||||| |||||||||||||||||| ||| ||||||||||||| || ||||
Sbjct 528 TTCTCAACGTTTGCAACAGAAGGCTTCCGTCTAATTTCCAATGTGCTTGAG-GGATATC 585
> AT4G12500.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr4:7414150-7414927
REVERSE LENGTH=778
Length=778
Score = 628 bits (340), Expect = 1e-179
Identities = 504/578 (87%), Gaps = 31/578 (5%)
Strand=Plus/Plus
Query 21 AATAACAATGGCTTCAAAGAACTCAGCCTCTCTTGCTCTTTTCTTTGCCCTCAACATCCt 80
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 19 AATACCAATGGCTTCAAAGAACTCAACCTCTCTTGCTCTTTTCTTTGCCCTCAACATCCT 78
Query 81 ttttttCACCTTAACCGCTGCTACTGATTGTAGATGCAACCCAAGTCCTAAGCACAAGCC 140
|||||||||||||||| |||||||||| | | | | | | | | ||| ||
Sbjct 79 TTTTTTCACCTTAACCACTGCTACTGA-T-T-G-T------C--G----ATG--CAA-CC 119
Query 141 GATCCCAAGTCCTAAGCCTAGGCCGGTCCCAAGTCCTTCA-GTTCCAACTCCTTCAGT-C 198
| |||||||||||||||| ||||||||||||| | || || | ||| | ||| |
Sbjct 120 --T---AAGTCCTAAGCCTAGGACGGTCCCAAGTCC-AAAGGTCCCGAGTCC-TAAGTAC 172
Query 199 CCAATTCCTTCGGTTCCAACTCCTTCAGTCCCAATTCCTTCGGTCCCAACTCCTTCGGTC 258
|||| ||||||| |||||| |||||| ||||||| |||||| |||||||||||||| ||
Sbjct 173 CCAAGTCCTTCGATTCCAAGTCCTTCGGTCCCAACTCCTTCAGTCCCAACTCCTTCAGTT 232
Query 259 CCAACTCCTTCGGTCCCAAATCCTTCCGTACCAACTCCCGTCACACCTCCGAGCACCCCT 318
|||||||||||||| |||| |||| | || || || ||||| |||||||| ||||||
Sbjct 233 CCAACTCCTTCGGTACCAAGTCCTAAC---CCTACGCCTGTCACTCCTCCGAGAACCCCT 289
Query 319 GGCTCATCGGGAAACTGTCCCATCGATGCTCTCAGACTCGGTGTATGTGCGAATGTCCTA 378
|| ||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 290 GGTTCATCCGGAAACTGTCCTATCGATGCTCTCAGACTCGGTGTGTGTGCGAATGTCCTA 349
Query 379 AGCGGTCTACTTAACGTGCAGTTGGGACAGCCATCAGCTCAGCCATGCTGCTCGCTCATC 438
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 350 AGTGGTCTACTTAACGTGCAGTTGGGACAGCCATCAGCTCAACCATGCTGCTCGCTCATC 409
Query 439 CAGGGTTTGGTTGACCTCGACGCTGCGATTTGTCTCTGCACTGCTCTTAGGGCTAACGTT 498
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 410 CAAGGTTTGGTTGACCTTGACGCTGCGATTTGTCTCTGCACTGCCCTTAGGGCTAACGTT 469
Query 499 CTTGGCATCAACCTTAACGTTCCCATATCTCTCAGCGTTCTTCTCAACGTTTGTAACAGA 558
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 470 CTTGGCATCAACCTTAACGTTCCTATATCTCTCAGTGTTCTTCTCAACGTTTGCAACAGA 529
Query 559 AGGCTTCCGTCTGGTTTTCAATGTGCTTGAGCGGTATC 596
||||||||||||| ||| |||||||||| |||||||||
Sbjct 530 AGGCTTCCGTCTGATTTCCAATGTGCTTAAGCGGTATC 567
> AT4G12480.1 | Symbols: pEARLI 1 | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein
| chr4:7406105-7406937 REVERSE LENGTH=833
Length=833
Score = 424 bits (229), Expect = 7e-118
Identities = 327/373 (88%), Gaps = 11/373 (3%)
Strand=Plus/Plus
Query 239 CGGTCCCAACTCCTTCGGTCCCAACTCCTTCGGTCCCAAATCCTTCCGTACCAACTCCCG 298
||||||||| |||||| || |||| |||||||||||||| |||| | || | || |
Sbjct 221 CGGTCCCAAGTCCTTCAGTACCAAGTCCTTCGGTCCCAAGTCCTAAC---CCTAGGCCGG 277
Query 299 TCACACCTCCGAGCACCCCTGGCTCATCGGGAAACTGTCCCATCGATGCTCTCAGACTCG 358
|||| |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 278 TCACGCCTCCGAGAACCCCTGGCTCATCTGGAAACTGTCCTATCGATGCTCTCAGACTCG 337
Query 359 GTGTATGTGCGAATGTCCTAAGCGGTCTACTTAACGTGCAGTTGGGACAGCCATCAGCTC 418
||||||||||||| || ||||| ||||||| ||| | || ||||| |||||||||||||
Sbjct 338 GTGTATGTGCGAACGTTTTAAGCAGTCTACTCAACATTCAATTGGGTCAGCCATCAGCTC 397
Query 419 AGCCATGCTGCTCGCTCATCCAGGGTTTGGTTGACCTCGACGCTGCGATTTGTCTCTGCA 478
| ||||| |||||||||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 398 AACCATGTTGCTCGCTCATCCAAGGTTTGGTTGACCTCGACGCTGCCATTTGTCTTTGCA 457
Query 479 CTGCTCTTAGGGCTAACGTTCTTGGCATCAACCTTAACGTTCCC-ATATCTCTCAGCGTT 537
|||| |||||||||||||||||||| |||||||||||||| ||| ||||||||||| |||
Sbjct 458 CTGCGCTTAGGGCTAACGTTCTTGGTATCAACCTTAACGT-CCCGATATCTCTCAGTGTT 516
Query 538 CTTCTCAACGTTTGTAACAGAA-GGCTTCCGTCTGGTTTTCAATGTGCTTGAGCGG-TAT 595
|||||||||||||||||||||| || |||||||||| || |||||||||||| || |||
Sbjct 517 CTTCTCAACGTTTGTAACAGAAAGG-TTCCGTCTGGCTTCCAATGTGCTTGAA-GGATAT 574
Query 596 C-GCTTATGCATA 607
| ||| |||||||
Sbjct 575 CAGCT-ATGCATA 586
> AT4G12470.1 | Symbols: AZI1 | azelaic acid induced 1 | chr4:7401109-7401907
REVERSE LENGTH=799
Length=799
Score = 381 bits (206), Expect = 4e-105
Identities = 281/316 (89%), Gaps = 9/316 (3%)
Strand=Plus/Plus
Query 298 GTCACACCTCCGA-GCACCCCTGGCTCAT-CGGGAA-A-CTGTCCCATCGATGCTCTC-A 352
||||||||||| | |||||||||| |||| ||| || | |||||| || ||||||||| |
Sbjct 244 GTCACACCTCC-ACGCACCCCTGGTTCATCCGGAAACAGCTGTCCTATTGATGCTCTCAA 302
Query 353 GACTCGGTGTATGTGCGAATGTCCTAAGCGGTCTACTTAACGTGCAGTTGGGACAGCCAT 412
| |||||||||||||| |||||| ||||| ||||||| ||| | ||||||||||||||||
Sbjct 303 G-CTCGGTGTATGTGCAAATGTCTTAAGCAGTCTACTCAACATCCAGTTGGGACAGCCAT 361
Query 413 CAGCTCAGCCATGCTGCTCGCTCATCCAGGGTTTGGTTGACCTCGACGCTGCGATTTGTC 472
| |||| | ||| |||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 362 CCTCTCAACAATGTTGCTCGCTCATCCAAGGTTTGGTTGACGTCGACGCTGCGATTTGTC 421
Query 473 TCTGCACTGCTCTTAGGGCTAACGTTCTTGGCATCAACCTTAACGTTCCCATATCTCTCA 532
| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 422 TATGCACTGCTCTGAGGGCTAACGTTCTTGGTATCAACCTTAACGTTCCGATATCTCTCA 481
Query 533 GCGTTCTTCTCAACGTTTGTAACAGAAGGCTTCCGTCTGGTTTTCAATGTGCTTGAGCGG 592
||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||
Sbjct 482 GCGTTCTTCTCAACGTTTGTAACAGAAAGCTTCCATCTGGTTTCCAATGTGCTTGAGCAA 541
Query 593 TATCGC-TTATGCATA 607
|||| | |||||||||
Sbjct 542 TATC-CATTATGCATA 556
Score = 180 bits (97), Expect = 2e-44
Identities = 163/192 (85%), Gaps = 15/192 (8%)
Strand=Plus/Plus
Query 24 AAC-AATGGCTTCAAAGAACTCAGCCTCTCTTGCTCTTTTCTTTGCCCTCAACATCCttt 82
||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 47 AACAAATGGCTTCAAAGAACTCAGCCTCTCTTGCTCTTTTCTTTGCGCTCAACATCCTCT 106
Query 83 ttttCACCTTAACCGCTGCTACTGATTGTAGA-TGCAACCCAAGTCCTAAGCACAA-GCC 140
||||||||||||||| ||| || |||| | | ||||| ||||||||||| | ||| |||
Sbjct 107 TTTTCACCTTAACCGTTGCAACAAATTGCA-ACTGCAAGCCAAGTCCTAAAC-CAAAGCC 164
Query 141 -GATCCCAAGTCCTAAGCCTAGGCCGGTCCCAA-GTCCTTCAGTTCCAAC---TCCTTCA 195
| |||||||||||||||| | |||||||| || ||||| | | ||| | |||||||
Sbjct 165 AG-TCCCAAGTCCTAAGCCCAAGCCGGTCC-AATGTCCTCC--T-CCACCCCGTCCTTCA 219
Query 196 GTCCCAATTCCT 207
||||||| ||||
Sbjct 220 GTCCCAAGTCCT 231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29286507701
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5