BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943164
Length=432
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12510.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 538 2e-152
AT4G12520.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 532 8e-151
> AT4G12510.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr4:7417236-7417803
REVERSE LENGTH=568
Length=568
Score = 538 bits (291), Expect = 2e-152
Identities = 374/414 (90%), Gaps = 6/414 (1%)
Strand=Plus/Plus
Query 22 ATGGCTTCGAAAACCTCAGCATCCCTTGTCATTTTCCTCACATTCAGCATCCTCTTCTTC 81
|||||||| |||| ||||| || |||||||||||||||||||||| ||| || || |||
Sbjct 1 ATGGCTTCAAAAATTTCAGCCTCTCTTGTCATTTTCCTCACATTCAACATTCTTTTTTTC 60
Query 82 ACCTTGACCACCGCATGTGGCGGTGGCTGCAG-TCCAACCCCTAAACCCAAGCCTAAGCC 140
|| || |||||||||||||||||||||||||| ||| |||||||||||||| ||||||||
Sbjct 61 ACTTTAACCACCGCATGTGGCGGTGGCTGCAGTTCC-ACCCCTAAACCCAAACCTAAGCC 119
Query 141 CCAGTCCACCGGAAGCTGCCC-AAGAGACACTCTCAAGCTTGGCGTTTGCGCCAATGTCC 199
| ||||||||||||||||||| || ||||||||||||||| ||||||||||||||||| |
Sbjct 120 CAAGTCCACCGGAAGCTGCCCTAA-AGACACTCTCAAGCTCGGCGTTTGCGCCAATGTTC 178
Query 200 TCAAGGATCTTCTCAAAATCCAGTTGGGCACACCACCAGTCAAGCCTTGTTGCTCCCTCC 259
||||||||||||||||||| |||||||| ||||||||||| ||||||||||| || ||||
Sbjct 179 TCAAGGATCTTCTCAAAATTCAGTTGGGAACACCACCAGTGAAGCCTTGTTGTTCGCTCC 238
Query 260 TCAAGGGTCTGGTTGATCTTGAGGCTGCGGCTTGTCTCTGCACTGCCCTAAAGGC-AAAT 318
|||| ||| | ||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 239 TCAATGGTTTAGTTGATCTTGAGGCTGCCGCTTGTCTCTGCACCGCCCTAAAGGCTAAA- 297
Query 319 GTTTTAGGCACTAAGCTTAATGTTCCTGTCTCTCTCAGCCTTCTTCTCAATGTTTGTGGC 378
|||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 298 GTTTTAGGCATTAATCTTAATGTTCCCGTCTCTCTCAGCCTTCTTCTCAATGTTTGTGGC 357
Query 379 AGGAAGGTTCCTTCTAAATTCGTATGTGCTTGATCTATCTACCCACCCTTCGAT 432
| ||||||||||||| |||||||||||||||| |||||| ||||||||||||
Sbjct 358 AAGAAGGTTCCTTCTGGTTTCGTATGTGCTTGATATATCTATCCACCCTTCGAT 411
> AT4G12520.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr4:7421056-7421738
REVERSE LENGTH=683
Length=683
Score = 532 bits (288), Expect = 8e-151
Identities = 379/423 (90%), Gaps = 6/423 (1%)
Strand=Plus/Plus
Query 13 TTTCGAGAGATGGCTTCGAAAACCTCAGCATCCCTTGTCATTTTCCTCACATTCAGCATC 72
||| |||| |||||||| |||| ||||| || |||||||||||||||||||||| |||
Sbjct 62 TTTTGAGAAATGGCTTCAAAAATTTCAGCCTCTCTTGTCATTTTCCTCACATTCAACATT 121
Query 73 CTCTTCTTCACCTTGACCACCGCATGTGGCGGTGGCTGCAG-TCCAACCCCTAAACCCAA 131
|| || ||||| || |||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 122 CTTTTTTTCACTTTAACCACCGCATGTGGCGGTGGCTGCAGTTCC-ACCCCTAAACCCAA 180
Query 132 GCCTAAGCCCCAGTCCACCGGAAGCTGCCC-AAGAGACACTCTCAAGCTTGGCGTTTGCG 190
||||||||| ||||||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct 181 ACCTAAGCCCAAGTCCACCGGAAGCTGCCCTAA-AGACACTCTCAAGCTCGGCGTTTGCG 239
Query 191 CCAATGTCCTCAAGGATCTTCTCAAAATCCAGTTGGGCACACCACCAGTCAAGCCTTGTT 250
||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 240 CCAATGTTCTCAAGGATCTTCTCAAAATTCAGTTGGGAACACCACCAGTGAAGCCTTGTT 299
Query 251 GCTCCCTCCTCAAGGGTCTGGTTGATCTTGAGGCTGCGGCTTGTCTCTGCACTGCCCTAA 310
| || |||||||| ||| | ||||||||||||||||| |||||||||||||| |||||||
Sbjct 300 GTTCGCTCCTCAATGGTTTAGTTGATCTTGAGGCTGCCGCTTGTCTCTGCACCGCCCTAA 359
Query 311 AGGC-AAATGTTTTAGGCACTAAGCTTAATGTTCCTGTCTCTCTCAGCCTTCTTCTCAAT 369
|||| ||| |||||||||| ||| ||||||||||| ||||||||||||||||||||||||
Sbjct 360 AGGCTAAA-GTTTTAGGCATTAATCTTAATGTTCCCGTCTCTCTCAGCCTTCTTCTCAAT 418
Query 370 GTTTGTGGCAGGAAGGTTCCTTCTAAATTCGTATGTGCTTGATCTATCTACCCACCCTTC 429
|||||||||| |||||||||||| |||||||||||||||| |||||| |||| ||||
Sbjct 419 GTTTGTGGCAAGAAGGTTCCTTCCGGCTTCGTATGTGCTTGATATATCTATCCACTCTTC 478
Query 430 GAT 432
|||
Sbjct 479 GAT 481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20509241592
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5