BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943165
Length=430
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12510.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 547 3e-155
AT4G12520.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 540 4e-153
> AT4G12510.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr4:7417236-7417803
REVERSE LENGTH=568
Length=568
Score = 547 bits (296), Expect = 3e-155
Identities = 370/406 (91%), Gaps = 4/406 (1%)
Strand=Plus/Plus
Query 21 ATGGCTTCGAAAACCTCAGCATCCCTTGTCATTTTCCTCACATTCAACATCCTCTTCTTC 80
|||||||| |||| ||||| || |||||||||||||||||||||||||| || || |||
Sbjct 1 ATGGCTTCAAAAATTTCAGCCTCTCTTGTCATTTTCCTCACATTCAACATTCTTTTTTTC 60
Query 81 ACCTTGACCACCGCATGTGGCGGTGGCTGCAG-TCCAACCCCTAAACCCAAGCCTAAGCC 139
|| || |||||||||||||||||||||||||| ||| |||||||||||||| ||||||||
Sbjct 61 ACTTTAACCACCGCATGTGGCGGTGGCTGCAGTTCC-ACCCCTAAACCCAAACCTAAGCC 119
Query 140 CAAGTCCACCGGAAGCTGCCC-AAGAGACACTCTCAAGCTTGGCGTTTGCGCCAATGTCC 198
||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||| |
Sbjct 120 CAAGTCCACCGGAAGCTGCCCTAA-AGACACTCTCAAGCTCGGCGTTTGCGCCAATGTTC 178
Query 199 TCAAGGATCTTCTCAAAATCCAGTTGGGCACACCACCAGTCAAGCCTTGCTGCTCCCTCC 258
||||||||||||||||||| |||||||| ||||||||||| |||||||| || || ||||
Sbjct 179 TCAAGGATCTTCTCAAAATTCAGTTGGGAACACCACCAGTGAAGCCTTGTTGTTCGCTCC 238
Query 259 TTAAGGGTCTGGTTGATCTTGAGGCTGCGGCTTGTCTCTGCACCGCCCTAAAGGCTAATG 318
| || ||| | ||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 239 TCAATGGTTTAGTTGATCTTGAGGCTGCCGCTTGTCTCTGCACCGCCCTAAAGGCTAAAG 298
Query 319 TCTTAGGCAATAAACTTAATGTTCCAGTCTCTCTCAGCCTTCTTCTCAATGTTTGTGGCA 378
| ||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 299 TTTTAGGCATTAATCTTAATGTTCCCGTCTCTCTCAGCCTTCTTCTCAATGTTTGTGGCA 358
Query 379 GGAAGGTTCCTTCTGGATTCGTATGTGCTTGATTTATCTATCCACC 424
||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 359 AGAAGGTTCCTTCTGGTTTCGTATGTGCTTGATATATCTATCCACC 404
> AT4G12520.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr4:7421056-7421738
REVERSE LENGTH=683
Length=683
Score = 540 bits (292), Expect = 4e-153
Identities = 371/409 (91%), Gaps = 5/409 (1%)
Strand=Plus/Plus
Query 21 ATGGCTTCGAAAACCTCAGCATCCCTTGTCATTTTCCTCACATTCAACATCCTCTTCTTC 80
|||||||| |||| ||||| || |||||||||||||||||||||||||| || || |||
Sbjct 71 ATGGCTTCAAAAATTTCAGCCTCTCTTGTCATTTTCCTCACATTCAACATTCTTTTTTTC 130
Query 81 ACCTTGACCACCGCATGTGGCGGTGGCTGCAG-TCCAACCCCTAAACCCAAGCCTAAGCC 139
|| || |||||||||||||||||||||||||| ||| |||||||||||||| ||||||||
Sbjct 131 ACTTTAACCACCGCATGTGGCGGTGGCTGCAGTTCC-ACCCCTAAACCCAAACCTAAGCC 189
Query 140 CAAGTCCACCGGAAGCTGCCC-AAGAGACACTCTCAAGCTTGGCGTTTGCGCCAATGTCC 198
||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||| |
Sbjct 190 CAAGTCCACCGGAAGCTGCCCTAA-AGACACTCTCAAGCTCGGCGTTTGCGCCAATGTTC 248
Query 199 TCAAGGATCTTCTCAAAATCCAGTTGGGCACACCACCAGTCAAGCCTTGCTGCTCCCTCC 258
||||||||||||||||||| |||||||| ||||||||||| |||||||| || || ||||
Sbjct 249 TCAAGGATCTTCTCAAAATTCAGTTGGGAACACCACCAGTGAAGCCTTGTTGTTCGCTCC 308
Query 259 TTAAGGGTCTGGTTGATCTTGAGGCTGCGGCTTGTCTCTGCACCGCCCTAAAGGCTAATG 318
| || ||| | ||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 309 TCAATGGTTTAGTTGATCTTGAGGCTGCCGCTTGTCTCTGCACCGCCCTAAAGGCTAAAG 368
Query 319 TCTTAGGCAATAAACTTAATGTTCCAGTCTCTCTCAGCCTTCTTCTCAATGTTTGTGGCA 378
| ||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 369 TTTTAGGCATTAATCTTAATGTTCCCGTCTCTCTCAGCCTTCTTCTCAATGTTTGTGGCA 428
Query 379 GGAAGGTTCCTTCTGGATTCGTATGTGCTTGATTTATCTATCCAC-CTT 426
|||||||||||| || |||||||||||||||| ||||||||||| |||
Sbjct 429 AGAAGGTTCCTTCCGGCTTCGTATGTGCTTGATATATCTATCCACTCTT 477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20408706094
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5