BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943174
Length=787
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12590.1 | Symbols: | Protein of unknown function DUF106, t... 1319 0.0
> AT4G12590.1 | Symbols: | Protein of unknown function DUF106,
transmembrane | chr4:7451004-7453088 REVERSE LENGTH=1140
Length=1140
Score = 1319 bits (714), Expect = 0.0
Identities = 761/784 (97%), Gaps = 2/784 (0%)
Strand=Plus/Plus
Query 4 AGAGAGATAATTAGGGCTTAGAATGGCGGAGGATCTAGTTCTGGATACGGCGATCAGAGA 63
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 91 AGAGAGATAATTAGGGTTTAGAATGGCGGAGGATCTAGTTCTCGATACGGCGATCAGAGA 150
Query 64 TTGGGTTCTGATTCCTCTCTCCGTTGTGATGGTTCTAATTGGTATTTTGAGATACTTTGT 123
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 151 TTGGGTTCTGATTCCTCTCTCCGTAGTGATGGTTCTAATCGGTATTTTGAGATACTTTGT 210
Query 124 CTCTAAGCTTATGCGTTCTTCTCCAACTCCTGATGCTAAGATGGTTAAAGAAGGGCAAGT 183
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 211 CTCTAAGCTTATGCGTTCTACTCCAACTCCTGATGCTAAGATGGTTAAAGAAGGGCAAGT 270
Query 184 TGTTATCAGAGCTCGGAATCTTAAAGTCGGTGCTAATTTTATCCCGCCGAGATCATTCCG 243
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 271 TGTTATTAGAGCTCGGAATCTTAAAGTCGGTGCTAATTTTATCCCGCCGAAATCATTCCG 330
Query 244 TACTCGGAGATTCTACTTTAGCAACGAGGAGAATGGTTTGCTACATGTTCCCAAGGGAGA 303
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 331 TGCTCGGAGATTCTACTTCAGCAACGAGGAGAATGGTTTGCTACATGTTCCCAAGGGAGA 390
Query 304 AGCTCAAAATCCACAAGCTGCCATGTTTTCTGATCCTAACATGGCCATGGATATGATGAA 363
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 391 AGCTCAAAATCCACAAGCTGCTATGTTTTCTGATCCTAACATGGCCATGGATATGATGAA 450
Query 364 GAAAAATCTTTCTATGATTATTCCTCAGACACTCACTTTTGCATGGGTCAACTTCTTCTT 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 GAAAAATCTTTCTATGATTATTCCTCAGACACTCACTTTTGCATGGGTCAACTTCTTCTT 510
Query 424 CTCTGGATTTGTTGCAGCGAAGATACCATTTCCACTAACTCAGAGGTTCAGATCAATGTT 483
|||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 511 CTCTGGATTTGTTGCAGCCAAAATACCATTTCCACTGACTCAGAGGTTCAGATCAATGTT 570
Query 484 ACAGAATGGCATTGACTTGAGCACTGTCGATGTTAGCTACGTGAGTAGTCGTTCCTGGTA 543
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 571 ACAGAATGGCATTGACTTGAGCACTGTCGATGTTAGCTATGTGAGTAGTCGTTCCTGGTA 630
Query 544 CTTCTTGAACTTGTTTGGATTAAGAGGCTTGTTCAGTCTCATTCTCGGAGATGAAAATGC 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 CTTCTTGAACTTGTTTGGATTAAGAGGCTTGTTCAGTCTCATTCTCGGAGATGAAAATGC 690
Query 604 GATTGATGACACACAACGTATGATGCAAATGGGTGGGTTTGGATTTGATGCATCAAAGAG 663
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 CATTGATGACACACAACGTATGATGCAAATGGGTGGGTTTGGATTTGATGCATCAAAGAG 750
Query 664 CCTGGGTGCAGAGAAGGATGGTCTT-GACATAATTCAGCACGAATGGGCTCTACCTCGAT 722
||||||||||||||||||||| || |||||||| |||||||||||||| ||||||||||
Sbjct 751 TCTGGGTGCAGAGAAGGATGGT-TTAGACATAATCCAGCACGAATGGGCACTACCTCGAT 809
Query 723 TTGAGCAACGCGCAGAATCTGTATTAAGAAAACTCGTGAAGTAGAGAGAAACGCGATAAG 782
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 810 TTGAGCAGCGCGCAGAATCTGTATTAAGAAAACTCGTGAAGTAGAGAGAAACACGATAAG 869
Query 783 ATTT 786
|||
Sbjct 870 GTTT 873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38278420014
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5