BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943178

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G12617.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   496    1e-139
  AT4G05630.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   316    8e-86 


> AT4G12617.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT4G05630.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; 
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr4:7459180-7459563 FORWARD LENGTH=384
Length=384

 Score =  496 bits (268),  Expect = 1e-139
 Identities = 348/385 (90%), Gaps = 11/385 (3%)
 Strand=Plus/Plus

Query  29   ATGGCAGATAATAGGTATTTTGAAGATCAGCCGTACGAGGTAGAAAACCCATTTAACATC  88
            ||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct  1    ATGGCAGGTAATAGGTATTTTGAAGATCAGCCGTATGAGGTAGAAAACCCTTTTAACATC  60

Query  89   ATGATAACGTTGTCACCATTTGACATAGATTTGAGTACTACGTTATTGGTGCCAAAAACG  148
            |||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct  61   ATGATAACGTTGTCACCATTTGACATAGATTTGAGTACTACGATAATGATGCCAAAAACG  120

Query  149  TTACTAGAAGCCAACTTATTTCCTTTCTTTGATATAAGTTTTCTCGTCGAATTGTTACAA  208
            |||||||| ||||||||||||| |||| | |||||||||| |||||||| ||||||||||
Sbjct  121  TTACTAGAGGCCAACTTATTTCGTTTCATGGATATAAGTTATCTCGTCGGATTGTTACAA  180

Query  209  GTTCGTAACAAG--A----T--T-GAAGTTTTTGACATTGATACTAAAATTACAACATTT  259
            |||| |||||||  |    |  | ||| ||||||| |||||||| |||||||||||||||
Sbjct  181  GTTCCTAACAAGCCAAAGGTGATTGAACTTTTTGATATTGATACCAAAATTACAACATTT  240

Query  260  CTTACCATGA-AAGAAGATGGAAATAATTTCAAATTTCGTGGGTGGAATAATATTCTCGA  318
            |||||||| | |||| |||||| ||||||||||||| | ||| |||||||||||||||||
Sbjct  241  CTTACCATAAGAAGA-GATGGAGATAATTTCAAATTCCATGGATGGAATAATATTCTCGA  299

Query  319  ACGAAAACATTACAGGGCAGGCGATACTCTTGCATTTTGGTGGGATCTCCATCACACTAG  378
            |||||||||||||| ||||||||||  | ||||||||||||||||||| |||||||||||
Sbjct  300  ACGAAAACATTACAAGGCAGGCGATGTTATTGCATTTTGGTGGGATCTTCATCACACTAG  359

Query  379  ACTTAATTTCAAACATGTTGCTTAG  403
            |||||||||||||||||||||||||
Sbjct  360  ACTTAATTTCAAACATGTTGCTTAG  384


> AT4G05630.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G12617.1); 
Has 22 Blast hits to 22 proteins in 3 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:2988448-2988822 
REVERSE LENGTH=375
Length=375

 Score =  316 bits (171),  Expect = 8e-86
 Identities = 285/339 (84%), Gaps = 11/339 (3%)
 Strand=Plus/Plus

Query  74   AACCCATTTAACATCATGATAACGTTGTCACCATTTGACATAGATTTGAGTACTACGTTA  133
            ||||||| ||||||||||||||||||||||||||||||| | |||  |||||||||| ||
Sbjct  37   AACCCATATAACATCATGATAACGTTGTCACCATTTGACGTCGATAGGAGTACTACGATA  96

Query  134  TTGGTGCCAAAAACGTTACTAGAAGCCAACTTATTTCCTTTCTTTGATATAAGTTTTCTC  193
             || |||||||| ||||||||||| |||| |||||||||||| | || ||||||  ||||
Sbjct  97   ATGATGCCAAAAGCGTTACTAGAAACCAATTTATTTCCTTTCATGGAGATAAGTACTCTC  156

Query  194  GTCGAATTGTTACAAGTTC--GT-AA-C-AA-GAT--T-GAAGTTTTTGACATTGATACT  244
            ||| | |||||||||||||  |  || | || |||  | | ||| | ||| |||||||||
Sbjct  157  GTCCAGTTGTTACAAGTTCAAGACAAGCCAAAGATGATTGGAGTGTATGATATTGATACT  216

Query  245  AAAATTACAACATTTCTTACCATGAA-AGAAGATGGAAATAATTTCAAATTTCGTGGGTG  303
             |||||||||||| | | | ||| || | |||||||||||||||| ||||||| ||| ||
Sbjct  217  CAAATTACAACATATGTAATCAT-AAGACAAGATGGAAATAATTTTAAATTTCATGGATG  275

Query  304  GAATAATATTCTCGAACGAAAACATTACAGGGCAGGCGATACTCTTGCATTTTGGTGGGA  363
            |||| |||||||  || ||||||||||||  |||||||||||| ||||||||||||||||
Sbjct  276  GAATGATATTCTAAAAAGAAAACATTACAAAGCAGGCGATACTATTGCATTTTGGTGGGA  335

Query  364  TCTCCATCACACTAGACTTAATTTCAAACATGTTGCTTA  402
            ||| | ||| |||||||| ||||||||||||||||||||
Sbjct  336  TCTTCGTCATACTAGACTAAATTTCAAACATGTTGCTTA  374



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20056831851


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5