BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943179
Length=415
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05630.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 542 1e-153
AT4G12617.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 424 5e-118
> AT4G05630.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G12617.1);
Has 22 Blast hits to 22 proteins in 3 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:2988448-2988822
REVERSE LENGTH=375
Length=375
Score = 542 bits (293), Expect = 1e-153
Identities = 348/375 (93%), Gaps = 2/375 (1%)
Strand=Plus/Plus
Query 21 ATGGCGATTTTTCCAGATAAGCCGTATGAGGCAAACAACCCACATAACATCATGATAACG 80
||||||| |||||||||||||| |||||| ||||||||||| |||||||||||||||||
Sbjct 1 ATGGCGAATTTTCCAGATAAGCAGTATGACTCAAACAACCCATATAACATCATGATAACG 60
Query 81 TTGTCACCATTTGACGTCGATATGAGTACTACGATCATGATGCCAAAAGCGTTACTAGAA 140
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 61 TTGTCACCATTTGACGTCGATAGGAGTACTACGATAATGATGCCAAAAGCGTTACTAGAA 120
Query 141 ACCAATTTATTTCCTTTCATGGAGATAAGTACTCTCGTCGAACTGTTACAAGTTCCCA-A 199
||||||||||||||||||||||||||||||||||||||| | |||||||||||| | |
Sbjct 121 ACCAATTTATTTCCTTTCATGGAGATAAGTACTCTCGTCCAGTTGTTACAAGTTCA-AGA 179
Query 200 CAAGCCAAAGATGATTGGAATTTATGATATTGATAGTAAAATTACAACATTTGTTATCAT 259
||||||||||||||||||| | ||||||||||||| | |||||||||||| ||| |||||
Sbjct 180 CAAGCCAAAGATGATTGGAGTGTATGATATTGATACTCAAATTACAACATATGTAATCAT 239
Query 260 aaaaaaaGATGGAAATAATTTTAAATTTCATGGATGGAATGATATTCTCCTACGAAAACA 319
|| | ||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 240 AAGACAAGATGGAAATAATTTTAAATTTCATGGATGGAATGATATTCTAAAAAGAAAACA 299
Query 320 TTACAAAGCAGGCGATACTATTGCATTTTGGTGGGATCTTCGTCATACTAGACTTAATTT 379
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 TTACAAAGCAGGCGATACTATTGCATTTTGGTGGGATCTTCGTCATACTAGACTAAATTT 359
Query 380 CAAACAGGTTGCTTA 394
|||||| ||||||||
Sbjct 360 CAAACATGTTGCTTA 374
> AT4G12617.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT4G05630.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr4:7459180-7459563 FORWARD LENGTH=384
Length=384
Score = 424 bits (229), Expect = 5e-118
Identities = 320/364 (88%), Gaps = 6/364 (2%)
Strand=Plus/Plus
Query 35 AGATAAGCCGTATGAGGCA-AACAACCCACATAACATCATGATAACGTTGTCACCATTTG 93
|||| |||||||||||| | || ||||| |||||||||||||||||||||||||||||
Sbjct 24 AGATCAGCCGTATGAGGTAGAA-AACCCTTTTAACATCATGATAACGTTGTCACCATTTG 82
Query 94 ACGTCGATATGAGTACTACGATCATGATGCCAAAAGCGTTACTAGAAACCAATTTATTTC 153
|| | ||| ||||||||||||| |||||||||||| |||||||||| |||| |||||||
Sbjct 83 ACATAGATTTGAGTACTACGATAATGATGCCAAAAACGTTACTAGAGGCCAACTTATTTC 142
Query 154 CTTTCATGGAGATAAGT-ACTCTCGTCGAACTGTTACAAGTTCCCAACAAGCCAAAGATG 212
||||||||| |||||| | |||||||| | ||||||||||||| |||||||||||| ||
Sbjct 143 GTTTCATGGATATAAGTTA-TCTCGTCGGATTGTTACAAGTTCCTAACAAGCCAAAGGTG 201
Query 213 ATTGGAA-TTTATGATATTGATAGTAAAATTACAACATTTGTTATCATaaaaaaaGATGG 271
|||| || ||| ||||||||||| ||||||||||||||| ||| ||||| || ||||||
Sbjct 202 ATTG-AACTTTTTGATATTGATACCAAAATTACAACATTTCTTACCATAAGAAGAGATGG 260
Query 272 AAATAATTTTAAATTTCATGGATGGAATGATATTCTCCTACGAAAACATTACAAAGCAGG 331
| ||||||| ||||| |||||||||||| |||||||| ||||||||||||||| |||||
Sbjct 261 AGATAATTTCAAATTCCATGGATGGAATAATATTCTCGAACGAAAACATTACAAGGCAGG 320
Query 332 CGATACTATTGCATTTTGGTGGGATCTTCGTCATACTAGACTTAATTTCAAACAGGTTGC 391
|||| ||||||||||||||||||||||| ||| |||||||||||||||||||| |||||
Sbjct 321 CGATGTTATTGCATTTTGGTGGGATCTTCATCACACTAGACTTAATTTCAAACATGTTGC 380
Query 392 TTAG 395
||||
Sbjct 381 TTAG 384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19654689859
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5