BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943179 Length=415 Score E Sequences producing significant alignments: (Bits) Value AT4G05630.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 542 1e-153 AT4G12617.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 424 5e-118 > AT4G05630.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12617.1); Has 22 Blast hits to 22 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:2988448-2988822 REVERSE LENGTH=375 Length=375 Score = 542 bits (293), Expect = 1e-153 Identities = 348/375 (93%), Gaps = 2/375 (1%) Strand=Plus/Plus Query 21 ATGGCGATTTTTCCAGATAAGCCGTATGAGGCAAACAACCCACATAACATCATGATAACG 80 ||||||| |||||||||||||| |||||| ||||||||||| ||||||||||||||||| Sbjct 1 ATGGCGAATTTTCCAGATAAGCAGTATGACTCAAACAACCCATATAACATCATGATAACG 60 Query 81 TTGTCACCATTTGACGTCGATATGAGTACTACGATCATGATGCCAAAAGCGTTACTAGAA 140 |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| Sbjct 61 TTGTCACCATTTGACGTCGATAGGAGTACTACGATAATGATGCCAAAAGCGTTACTAGAA 120 Query 141 ACCAATTTATTTCCTTTCATGGAGATAAGTACTCTCGTCGAACTGTTACAAGTTCCCA-A 199 ||||||||||||||||||||||||||||||||||||||| | |||||||||||| | | Sbjct 121 ACCAATTTATTTCCTTTCATGGAGATAAGTACTCTCGTCCAGTTGTTACAAGTTCA-AGA 179 Query 200 CAAGCCAAAGATGATTGGAATTTATGATATTGATAGTAAAATTACAACATTTGTTATCAT 259 ||||||||||||||||||| | ||||||||||||| | |||||||||||| ||| ||||| Sbjct 180 CAAGCCAAAGATGATTGGAGTGTATGATATTGATACTCAAATTACAACATATGTAATCAT 239 Query 260 aaaaaaaGATGGAAATAATTTTAAATTTCATGGATGGAATGATATTCTCCTACGAAAACA 319 || | ||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 240 AAGACAAGATGGAAATAATTTTAAATTTCATGGATGGAATGATATTCTAAAAAGAAAACA 299 Query 320 TTACAAAGCAGGCGATACTATTGCATTTTGGTGGGATCTTCGTCATACTAGACTTAATTT 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 300 TTACAAAGCAGGCGATACTATTGCATTTTGGTGGGATCTTCGTCATACTAGACTAAATTT 359 Query 380 CAAACAGGTTGCTTA 394 |||||| |||||||| Sbjct 360 CAAACATGTTGCTTA 374 > AT4G12617.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G05630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:7459180-7459563 FORWARD LENGTH=384 Length=384 Score = 424 bits (229), Expect = 5e-118 Identities = 320/364 (88%), Gaps = 6/364 (2%) Strand=Plus/Plus Query 35 AGATAAGCCGTATGAGGCA-AACAACCCACATAACATCATGATAACGTTGTCACCATTTG 93 |||| |||||||||||| | || ||||| ||||||||||||||||||||||||||||| Sbjct 24 AGATCAGCCGTATGAGGTAGAA-AACCCTTTTAACATCATGATAACGTTGTCACCATTTG 82 Query 94 ACGTCGATATGAGTACTACGATCATGATGCCAAAAGCGTTACTAGAAACCAATTTATTTC 153 || | ||| ||||||||||||| |||||||||||| |||||||||| |||| ||||||| Sbjct 83 ACATAGATTTGAGTACTACGATAATGATGCCAAAAACGTTACTAGAGGCCAACTTATTTC 142 Query 154 CTTTCATGGAGATAAGT-ACTCTCGTCGAACTGTTACAAGTTCCCAACAAGCCAAAGATG 212 ||||||||| |||||| | |||||||| | ||||||||||||| |||||||||||| || Sbjct 143 GTTTCATGGATATAAGTTA-TCTCGTCGGATTGTTACAAGTTCCTAACAAGCCAAAGGTG 201 Query 213 ATTGGAA-TTTATGATATTGATAGTAAAATTACAACATTTGTTATCATaaaaaaaGATGG 271 |||| || ||| ||||||||||| ||||||||||||||| ||| ||||| || |||||| Sbjct 202 ATTG-AACTTTTTGATATTGATACCAAAATTACAACATTTCTTACCATAAGAAGAGATGG 260 Query 272 AAATAATTTTAAATTTCATGGATGGAATGATATTCTCCTACGAAAACATTACAAAGCAGG 331 | ||||||| ||||| |||||||||||| |||||||| ||||||||||||||| ||||| Sbjct 261 AGATAATTTCAAATTCCATGGATGGAATAATATTCTCGAACGAAAACATTACAAGGCAGG 320 Query 332 CGATACTATTGCATTTTGGTGGGATCTTCGTCATACTAGACTTAATTTCAAACAGGTTGC 391 |||| ||||||||||||||||||||||| ||| |||||||||||||||||||| ||||| Sbjct 321 CGATGTTATTGCATTTTGGTGGGATCTTCATCACACTAGACTTAATTTCAAACATGTTGC 380 Query 392 TTAG 395 |||| Sbjct 381 TTAG 384 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19654689859 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5