BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943182

Length=253
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G01930.1 | Symbols:  | Cysteine/Histidine-rich C1 domain fam...   196    6e-50


> AT4G01930.1 | Symbols:  | Cysteine/Histidine-rich C1 domain family 
protein | chr4:838802-840760 REVERSE LENGTH=1959
Length=1959

 Score =  196 bits (106),  Expect = 6e-50
 Identities = 158/183 (86%), Gaps = 3/183 (2%)
 Strand=Plus/Plus

Query  3    ATCCACGCGCATCTTATGATGCCTTGGACTGATCTAAGGAGAGGTGATTGTTGTGGACGC  62
            ||||||  ||||| |||| ||||||||| |||| | |||| ||||||||||||| |||| 
Sbjct  31   ATCCACAAGCATCATATGTTGCCTTGGAATGATATGAGGAAAGGTGATTGTTGTAGACGT  90

Query  63   TTGGAAGTTATCAGTGATGGTTACTATTGCAAAACCTGCGATTTTTTCGTTCACAAGAAA  122
            || |||| |||||||||||| ||||||||||||||||||||||||||||| |||||||  
Sbjct  91   TTTGAAGCTATCAGTGATGGCTACTATTGCAAAACCTGCGATTTTTTCGTCCACAAGAGC  150

Query  123  TGTGGTGA--G-TCCTCTGAATATATCGAGCATCCATCTCACTCTAGTCATACTCTTCAG  179
            ||||| ||  | ||||| |||||||||||||||||||||||| | |||||  ||||||||
Sbjct  151  TGTGGCGATAGGTCCTCCGAATATATCGAGCATCCATCTCACCCAAGTCACGCTCTTCAG  210

Query  180  CTT  182
            |||
Sbjct  211  CTT  213



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11511314521


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5