BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943189 Length=1680 Score E Sequences producing significant alignments: (Bits) Value AT4G05520.1 | Symbols: ATEHD2, EHD2 | EPS15 homology domain 2 |... 2649 0.0 > AT4G05520.1 | Symbols: ATEHD2, EHD2 | EPS15 homology domain 2 | chr4:2804515-2807926 FORWARD LENGTH=1741 Length=1741 Score = 2649 bits (1434), Expect = 0.0 Identities = 1591/1668 (95%), Gaps = 5/1668 (0%) Strand=Plus/Plus Query 15 CTCAGTTATGGAGACGTCGTCGGCGATCTCGATCGGTACTTGTTTGAAAGAGCATCAGAA 74 |||||| |||||||| || ||| |||||||||||||| ||||||| |||||||||||||| Sbjct 1 CTCAGTAATGGAGACTTCATCGACGATCTCGATCGGTTCTTGTTTAAAAGAGCATCAGAA 60 Query 75 GATCTACAAGGACTGGTTCAACATCGCCGATTCAGATGGAGATGGTCGTGTTTCCGGTAA 134 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 61 GATCTACAAGGAATGGTTCAACATCGCCGATTCAGATGGAGATGGTCGTGTTTCGGGTAA 120 Query 135 CGATGCTACGAAGTTCTTCGCGATGTCAAAGCTTTCTCGCCAGGAACTTAAACAGGTTTG 194 ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 121 CGATGCTACAAAGTTCTTCGCGATGTCAAAGCTTTCTCGCCAGGAACTCAAACAGGTTTG 180 Query 195 GGCAGTTGCGGATTCGAAGCGGCAAGGATTTCTTGGTTTATCGGAGTTCATCACTGCGAT 254 ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 181 GGCAGTTGCGGATTCAAAGCGGCAAGGATTTCTCGGTTTATCGGAGTTCATCACTGCGAT 240 Query 255 GAAGCTCGTCTCATTGGCACAAGAGGGACATGAAATTACTTCAGACCTTCTCAAAGGCTC 314 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 241 GAAGCTCGTCTCATTGGCACAAGAAGGACATGAAATTACTTCAGACCTTCTCAAAGGCTC 300 Query 315 AGTTGATATGAAGAGTGTGGAACTTCCAGTGTTGGAAGGACTAGAAAACGTGGTATCTAA 374 | |||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 301 AATTGACATGAAGAGTGTGGAACTTCCAGTGTTGGAAGGACTAGAAAACGTTGTATCAAA 360 Query 375 GCTGAAAGTGGCAAAAACAAATGTGGATGTTGAAGAAAATGTAGTTACCAAGCCACAAGT 434 || ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 361 GCAGAAAGTGTCAAAAACAAATGTGGATGTTGAAGACAATGTAGTTACCAAGCCACAAGT 420 Query 435 CACGGCAAAATCTCCTTGGTTCAAATCAAAATCTATTATCAAGCCACAAGTGAATGTTGT 494 |||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct 421 CACGGCAAAAACTCCTTGGTTCAAATCAAAATCTATTATTAAGCCACAAGTAAATGTGGT 480 Query 495 GACAATTGTTGATGGCTTGAAAAGATTGTACACTGAAAAGCTAAAGCCTTTGGAAGTCAC 554 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GACAATTGTTGATGGCTTGAAAAGATTGTACACTGAAAAGCTAAAGCCTTTGGAAGTCAC 540 Query 555 ATATCGTTTCAATGATTTTGCATCCCCTGTACTGACTAATAGTGATTTTGACGCCAAACC 614 |||||| |||||||||||||||||||| |||||||||| ||| |||||||| |||||||| Sbjct 541 ATATCGGTTCAATGATTTTGCATCCCCGGTACTGACTAGTAGCGATTTTGATGCCAAACC 600 Query 615 AATGGTAATGCTTTTGGGTCAGTATTCCACCGGAAAAACAACATTTATAAAACACTTGCT 674 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 601 AATGGTAATGCTTTTGGGTCAATATTCCACCGGAAAAACAACATTTATAAAACACTTGCT 660 Query 675 CGGATGTGATTACCCAGGAGCTCACATTGGTCCAGAGCCAACAACGGATAGATTTGTGGT 734 ||||||||| |||||||||||||| || ||||||||||||||||| ||||| ||||| || Sbjct 661 CGGATGTGACTACCCAGGAGCTCATATCGGTCCAGAGCCAACAACAGATAGGTTTGTAGT 720 Query 735 TGCAATGAGTGGACCAGACGAACGCACCATACCTGGAAATACCATGGCTGTTCAAGCTGA 794 |||||||||||||||||| || || || |||||||||||||||||||||||||||||||| Sbjct 721 TGCAATGAGTGGACCAGATGAGCGGACTATACCTGGAAATACCATGGCTGTTCAAGCTGA 780 Query 795 CATGCCATTTAATGGGCTAACAAGTTTTGGAGGTGCTTTCCTCTCAAAGTTCGAGTGTTC 854 |||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 781 CATGCCATTTAACGGACTAACAAGCTTTGGAGGTGCTTTCCTCTCAAAGTTCGAGTGTTC 840 Query 855 TCAAATGCCGCATCCGGTTTTGGACCAAATTACTCTTGTAGACACACCTGGGGTTCTTTC 914 |||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| Sbjct 841 TCAAATGCCGCATCCGGTCTTGGACCAAATTACTCTTGTAGACACTCCTGGAGTTCTTTC 900 Query 915 AGGAGAGAAGCAAAGGATGCAAAGGAGCTATGACTTCACTGGTGTCATCTCATGGTTTGC 974 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 AGGAGAGAAACAAAGGATGCAAAGGAGCTATGACTTCACTGGTGTCATCTCATGGTTTGC 960 Query 975 ATCTAAATGTGATATGATTCTTCTTCTCTTTGATCCCCACAAGCTTGACATCAGCGATGA 1034 ||||||||| || |||||||| || ||||||||||||||||||||||||||||| ||||| Sbjct 961 ATCTAAATGCGACATGATTCTCCTGCTCTTTGATCCCCACAAGCTTGACATCAGTGATGA 1020 Query 1035 ATTCAAACGTGTGATAACATCTCTACGTGGTAATGAAGACAAGATCCGTGTTGTCTTAAA 1094 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 ATTCAAACGTGTGATAACATCTCTACGTGGTAATGAAGACAAGATCCGTGTTGTCTTAAA 1080 Query 1095 CAAAGCTGACCAAGTTGATACTCAACAACTAATGAGAGTGTATGGAGCATTAATGTGGTC 1154 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1081 CAAAGCTGACCAAGTTGATACTCAACAACTAATGAGAGTGTATGGAGCATTGATGTGGTC 1140 Query 1155 GCTTGGTAAAGTCCTGAACACACCAGAGGTCGTACGTGTCTATATTGGGTCCTTCAACGA 1214 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1141 GCTTGGTAAAGTCCTGAACACACCAGAGGTCGTACGTGTCTATATTGGGTCCTTCAATGA 1200 Query 1215 CAAACCCATAAACGAAGATGCAGTTGGACCGATTGGAAAAGAACTTTTTGAGAAAGAGCA 1274 ||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||| Sbjct 1201 CAAACCCATAAACGAAGTTGCAGTTGGACCGATTGGGAAAGAACTCTTTGAGAAAGAGCA 1260 Query 1275 AAATGATCTTCTAGCAGACTTAATGGATATACCCAAGAAAGCATGTGACAGAAAGATTAA 1334 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1261 AAATGATCTTCTAGCAGACTTAATGGACGTACCCAAGAAAGCATGTGACAGAAAGATTAA 1320 Query 1335 CGAGTTTGTGAAGCGAGCTCGAGCTGCAAAGATCAATGCATACATAATGAGTCACCTTAA 1394 ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 1321 TGAGTTTGTGAAGCGAGCTCGATCTGCAAAGATAAATGCATACATAATGAGTCACCTTAA 1380 Query 1395 GAAGGAAATGCCAGCAATGATGGGCAAATCAAAAGCTCAGCAACGTCTCATGGACAATCT 1454 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1381 GAAGGAAATGCCAGCAATGATGGGCAAATCCAAAGCTCAGCAACGTCTCATGGACAATCT 1440 Query 1455 CGAAGAAGAATTTGGAAAGGTGCAGCGAGAGTTTCATCTTCCGGCTGGAGACTTCCCAAG 1514 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 1441 CGAAGAAGAATTTGGAAAGGTGCAGCGAGAGTTTCATCTTCCAGCTGGAGACTTTCCAAG 1500 Query 1515 TGTGGAGCATTTCAGAGAAGTATTGGGAGGCTATAACATTGACAAATTCGAGAAATTGAA 1574 |||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1501 TGTGGAACATTTTAGAGAAGTATTGGGAGGCTATAACATTGACAAATTCGAGAAACTGAA 1560 Query 1575 GCCTAAGATGATTCAAGCTGTGGATGATATGCTGGGATACGATATTCCAGATCTCTTGAA 1634 |||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| Sbjct 1561 GCCTAAGATGATTCAAGCAGTAGATGATATGCTGGGATACGACATTCCAGATCTCTTGAA 1620 Query 1635 GAAATTCAGAAATCCTTATGAT--T-AAATAATAATG-TCAGCTACTT 1678 |||||||||||||||||||||| | ||||||||||| || | ||||| Sbjct 1621 GAAATTCAGAAATCCTTATGATAATTAAATAATAATGCTCGG-TACTT 1667 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83031701430 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5