BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943189
Length=1680
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05520.1 | Symbols: ATEHD2, EHD2 | EPS15 homology domain 2 |... 2649 0.0
> AT4G05520.1 | Symbols: ATEHD2, EHD2 | EPS15 homology domain 2
| chr4:2804515-2807926 FORWARD LENGTH=1741
Length=1741
Score = 2649 bits (1434), Expect = 0.0
Identities = 1591/1668 (95%), Gaps = 5/1668 (0%)
Strand=Plus/Plus
Query 15 CTCAGTTATGGAGACGTCGTCGGCGATCTCGATCGGTACTTGTTTGAAAGAGCATCAGAA 74
|||||| |||||||| || ||| |||||||||||||| ||||||| ||||||||||||||
Sbjct 1 CTCAGTAATGGAGACTTCATCGACGATCTCGATCGGTTCTTGTTTAAAAGAGCATCAGAA 60
Query 75 GATCTACAAGGACTGGTTCAACATCGCCGATTCAGATGGAGATGGTCGTGTTTCCGGTAA 134
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 GATCTACAAGGAATGGTTCAACATCGCCGATTCAGATGGAGATGGTCGTGTTTCGGGTAA 120
Query 135 CGATGCTACGAAGTTCTTCGCGATGTCAAAGCTTTCTCGCCAGGAACTTAAACAGGTTTG 194
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 CGATGCTACAAAGTTCTTCGCGATGTCAAAGCTTTCTCGCCAGGAACTCAAACAGGTTTG 180
Query 195 GGCAGTTGCGGATTCGAAGCGGCAAGGATTTCTTGGTTTATCGGAGTTCATCACTGCGAT 254
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 GGCAGTTGCGGATTCAAAGCGGCAAGGATTTCTCGGTTTATCGGAGTTCATCACTGCGAT 240
Query 255 GAAGCTCGTCTCATTGGCACAAGAGGGACATGAAATTACTTCAGACCTTCTCAAAGGCTC 314
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 241 GAAGCTCGTCTCATTGGCACAAGAAGGACATGAAATTACTTCAGACCTTCTCAAAGGCTC 300
Query 315 AGTTGATATGAAGAGTGTGGAACTTCCAGTGTTGGAAGGACTAGAAAACGTGGTATCTAA 374
| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 301 AATTGACATGAAGAGTGTGGAACTTCCAGTGTTGGAAGGACTAGAAAACGTTGTATCAAA 360
Query 375 GCTGAAAGTGGCAAAAACAAATGTGGATGTTGAAGAAAATGTAGTTACCAAGCCACAAGT 434
|| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 361 GCAGAAAGTGTCAAAAACAAATGTGGATGTTGAAGACAATGTAGTTACCAAGCCACAAGT 420
Query 435 CACGGCAAAATCTCCTTGGTTCAAATCAAAATCTATTATCAAGCCACAAGTGAATGTTGT 494
|||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 421 CACGGCAAAAACTCCTTGGTTCAAATCAAAATCTATTATTAAGCCACAAGTAAATGTGGT 480
Query 495 GACAATTGTTGATGGCTTGAAAAGATTGTACACTGAAAAGCTAAAGCCTTTGGAAGTCAC 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GACAATTGTTGATGGCTTGAAAAGATTGTACACTGAAAAGCTAAAGCCTTTGGAAGTCAC 540
Query 555 ATATCGTTTCAATGATTTTGCATCCCCTGTACTGACTAATAGTGATTTTGACGCCAAACC 614
|||||| |||||||||||||||||||| |||||||||| ||| |||||||| ||||||||
Sbjct 541 ATATCGGTTCAATGATTTTGCATCCCCGGTACTGACTAGTAGCGATTTTGATGCCAAACC 600
Query 615 AATGGTAATGCTTTTGGGTCAGTATTCCACCGGAAAAACAACATTTATAAAACACTTGCT 674
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 601 AATGGTAATGCTTTTGGGTCAATATTCCACCGGAAAAACAACATTTATAAAACACTTGCT 660
Query 675 CGGATGTGATTACCCAGGAGCTCACATTGGTCCAGAGCCAACAACGGATAGATTTGTGGT 734
||||||||| |||||||||||||| || ||||||||||||||||| ||||| ||||| ||
Sbjct 661 CGGATGTGACTACCCAGGAGCTCATATCGGTCCAGAGCCAACAACAGATAGGTTTGTAGT 720
Query 735 TGCAATGAGTGGACCAGACGAACGCACCATACCTGGAAATACCATGGCTGTTCAAGCTGA 794
|||||||||||||||||| || || || ||||||||||||||||||||||||||||||||
Sbjct 721 TGCAATGAGTGGACCAGATGAGCGGACTATACCTGGAAATACCATGGCTGTTCAAGCTGA 780
Query 795 CATGCCATTTAATGGGCTAACAAGTTTTGGAGGTGCTTTCCTCTCAAAGTTCGAGTGTTC 854
|||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 781 CATGCCATTTAACGGACTAACAAGCTTTGGAGGTGCTTTCCTCTCAAAGTTCGAGTGTTC 840
Query 855 TCAAATGCCGCATCCGGTTTTGGACCAAATTACTCTTGTAGACACACCTGGGGTTCTTTC 914
|||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 841 TCAAATGCCGCATCCGGTCTTGGACCAAATTACTCTTGTAGACACTCCTGGAGTTCTTTC 900
Query 915 AGGAGAGAAGCAAAGGATGCAAAGGAGCTATGACTTCACTGGTGTCATCTCATGGTTTGC 974
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AGGAGAGAAACAAAGGATGCAAAGGAGCTATGACTTCACTGGTGTCATCTCATGGTTTGC 960
Query 975 ATCTAAATGTGATATGATTCTTCTTCTCTTTGATCCCCACAAGCTTGACATCAGCGATGA 1034
||||||||| || |||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 961 ATCTAAATGCGACATGATTCTCCTGCTCTTTGATCCCCACAAGCTTGACATCAGTGATGA 1020
Query 1035 ATTCAAACGTGTGATAACATCTCTACGTGGTAATGAAGACAAGATCCGTGTTGTCTTAAA 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ATTCAAACGTGTGATAACATCTCTACGTGGTAATGAAGACAAGATCCGTGTTGTCTTAAA 1080
Query 1095 CAAAGCTGACCAAGTTGATACTCAACAACTAATGAGAGTGTATGGAGCATTAATGTGGTC 1154
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1081 CAAAGCTGACCAAGTTGATACTCAACAACTAATGAGAGTGTATGGAGCATTGATGTGGTC 1140
Query 1155 GCTTGGTAAAGTCCTGAACACACCAGAGGTCGTACGTGTCTATATTGGGTCCTTCAACGA 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1141 GCTTGGTAAAGTCCTGAACACACCAGAGGTCGTACGTGTCTATATTGGGTCCTTCAATGA 1200
Query 1215 CAAACCCATAAACGAAGATGCAGTTGGACCGATTGGAAAAGAACTTTTTGAGAAAGAGCA 1274
||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1201 CAAACCCATAAACGAAGTTGCAGTTGGACCGATTGGGAAAGAACTCTTTGAGAAAGAGCA 1260
Query 1275 AAATGATCTTCTAGCAGACTTAATGGATATACCCAAGAAAGCATGTGACAGAAAGATTAA 1334
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1261 AAATGATCTTCTAGCAGACTTAATGGACGTACCCAAGAAAGCATGTGACAGAAAGATTAA 1320
Query 1335 CGAGTTTGTGAAGCGAGCTCGAGCTGCAAAGATCAATGCATACATAATGAGTCACCTTAA 1394
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1321 TGAGTTTGTGAAGCGAGCTCGATCTGCAAAGATAAATGCATACATAATGAGTCACCTTAA 1380
Query 1395 GAAGGAAATGCCAGCAATGATGGGCAAATCAAAAGCTCAGCAACGTCTCATGGACAATCT 1454
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1381 GAAGGAAATGCCAGCAATGATGGGCAAATCCAAAGCTCAGCAACGTCTCATGGACAATCT 1440
Query 1455 CGAAGAAGAATTTGGAAAGGTGCAGCGAGAGTTTCATCTTCCGGCTGGAGACTTCCCAAG 1514
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1441 CGAAGAAGAATTTGGAAAGGTGCAGCGAGAGTTTCATCTTCCAGCTGGAGACTTTCCAAG 1500
Query 1515 TGTGGAGCATTTCAGAGAAGTATTGGGAGGCTATAACATTGACAAATTCGAGAAATTGAA 1574
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1501 TGTGGAACATTTTAGAGAAGTATTGGGAGGCTATAACATTGACAAATTCGAGAAACTGAA 1560
Query 1575 GCCTAAGATGATTCAAGCTGTGGATGATATGCTGGGATACGATATTCCAGATCTCTTGAA 1634
|||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 1561 GCCTAAGATGATTCAAGCAGTAGATGATATGCTGGGATACGACATTCCAGATCTCTTGAA 1620
Query 1635 GAAATTCAGAAATCCTTATGAT--T-AAATAATAATG-TCAGCTACTT 1678
|||||||||||||||||||||| | ||||||||||| || | |||||
Sbjct 1621 GAAATTCAGAAATCCTTATGATAATTAAATAATAATGCTCGG-TACTT 1667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83031701430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5