BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943199
Length=501
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04080.1 | Symbols: ISU3, ATISU3 | ISCU-like 3 | chr4:196335... 584 2e-166
> AT4G04080.1 | Symbols: ISU3, ATISU3 | ISCU-like 3 | chr4:1963358-1964423
FORWARD LENGTH=659
Length=659
Score = 584 bits (316), Expect = 2e-166
Identities = 464/530 (88%), Gaps = 32/530 (6%)
Strand=Plus/Plus
Query 1 ATAGAGAG-AGACGATCGATCATGTTAAGGCAAACAACTAAAAGA-ACTTTTCTAGGGCT 58
|||||||| || ||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 9 ATAGAGAGAAG-CGATCGATCATGTTAAGGCAAACAACTAAAAGAGCCTTTT-TAGGGCT 66
Query 59 CGCTTC-AAGAAATTCCACACCGTTCCCTGTCGTATCTCGATCGTACCATCCAAATGTCG 117
|||||| | |||| ||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 67 CGCTTCTCA-AAATCCCACACCGTTCCCTGTCGTGTCTCGATTATACCATCCAAATGTCA 125
Query 118 TCGACCATTATGATAATCCCCGTAACGTTGGATCATTCGATAAGAGTGATCCAAACGTTG 177
||||||||||||| ||||||||||||||||||||||| ||||||| |||||| |||||||
Sbjct 126 TCGACCATTATGACAATCCCCGTAACGTTGGATCATTTGATAAGAATGATCCTAACGTTG 185
Query 178 GTACGGGATTGGTCGGAGCTCCTCAATGTGGAGATGTAATGAAACTTCAGGTTAAGTTTG 237
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 186 GTACGGGATTGGTCGGAGCTCCTCAATGTGGAGATGTTATGAAGCTTCAGGTTAAGTTTG 245
Query 238 ATGGTTCTGGTCAAATCATTGATGCTAAATTCAAAACCTTTGGTTGTGGTTCCGCCATTG 297
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct 246 ATGGTTCTGGTCAAATCATTGATGCTAAATTCAAGACCTTTGGTTGTGGTTCTGCCATAG 305
Query 298 CAGCTTCCTCC--C--TACTGAATGGGTCAAGGGATAATCCGTGGA--A-G-----A--A 343
||||||| ||| | ||||||||||||||||||| |||||||||| | | | |
Sbjct 306 CAGCTTCTTCCGTCGCTACTGAATGGGTCAAGGGAAAATCCGTGGAGGAAGTCTTGACCA 365
Query 344 ----G--C----AAATTGCAAAGCATCTATCGTTGCCACCAGTAAAACTACTTTGTAGTA 393
| | ||||||| |||||||||||||||||||||||||| |||| ||| ||||
Sbjct 366 TAAAGAACTCGCAAATTGCGAAGCATCTATCGTTGCCACCAGTAAAGCTACATTGCAGTA 425
Query 394 TGCTTGCAGAAGACGCTATCAAGGCAGCGGTTAAAAACTACAAGCAGAAGCAAGCCGAGG 453
|||||||||||||||||||||||||||| |||||||||||||| ||||||||| | |||
Sbjct 426 TGCTTGCAGAAGACGCTATCAAGGCAGCAATTAAAAACTACAAGGAGAAGCAAGACAAGG 485
Query 454 CTAATAGTGAAACCGTCGAGGCC-T-GATTCCACTCATTTACAAGGTATT 501
||||| | |||||||| || || | ||||||||| ||||||| ||||||
Sbjct 486 CTAATGGCGAAACCGTTGAAACCATCGATTCCACTTATTTACACGGTATT 535
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23911453972
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5