BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943199 Length=501 Score E Sequences producing significant alignments: (Bits) Value AT4G04080.1 | Symbols: ISU3, ATISU3 | ISCU-like 3 | chr4:196335... 584 2e-166 > AT4G04080.1 | Symbols: ISU3, ATISU3 | ISCU-like 3 | chr4:1963358-1964423 FORWARD LENGTH=659 Length=659 Score = 584 bits (316), Expect = 2e-166 Identities = 464/530 (88%), Gaps = 32/530 (6%) Strand=Plus/Plus Query 1 ATAGAGAG-AGACGATCGATCATGTTAAGGCAAACAACTAAAAGA-ACTTTTCTAGGGCT 58 |||||||| || ||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 9 ATAGAGAGAAG-CGATCGATCATGTTAAGGCAAACAACTAAAAGAGCCTTTT-TAGGGCT 66 Query 59 CGCTTC-AAGAAATTCCACACCGTTCCCTGTCGTATCTCGATCGTACCATCCAAATGTCG 117 |||||| | |||| ||||||||||||||||||| ||||||| ||||||||||||||| Sbjct 67 CGCTTCTCA-AAATCCCACACCGTTCCCTGTCGTGTCTCGATTATACCATCCAAATGTCA 125 Query 118 TCGACCATTATGATAATCCCCGTAACGTTGGATCATTCGATAAGAGTGATCCAAACGTTG 177 ||||||||||||| ||||||||||||||||||||||| ||||||| |||||| ||||||| Sbjct 126 TCGACCATTATGACAATCCCCGTAACGTTGGATCATTTGATAAGAATGATCCTAACGTTG 185 Query 178 GTACGGGATTGGTCGGAGCTCCTCAATGTGGAGATGTAATGAAACTTCAGGTTAAGTTTG 237 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 186 GTACGGGATTGGTCGGAGCTCCTCAATGTGGAGATGTTATGAAGCTTCAGGTTAAGTTTG 245 Query 238 ATGGTTCTGGTCAAATCATTGATGCTAAATTCAAAACCTTTGGTTGTGGTTCCGCCATTG 297 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| | Sbjct 246 ATGGTTCTGGTCAAATCATTGATGCTAAATTCAAGACCTTTGGTTGTGGTTCTGCCATAG 305 Query 298 CAGCTTCCTCC--C--TACTGAATGGGTCAAGGGATAATCCGTGGA--A-G-----A--A 343 ||||||| ||| | ||||||||||||||||||| |||||||||| | | | | Sbjct 306 CAGCTTCTTCCGTCGCTACTGAATGGGTCAAGGGAAAATCCGTGGAGGAAGTCTTGACCA 365 Query 344 ----G--C----AAATTGCAAAGCATCTATCGTTGCCACCAGTAAAACTACTTTGTAGTA 393 | | ||||||| |||||||||||||||||||||||||| |||| ||| |||| Sbjct 366 TAAAGAACTCGCAAATTGCGAAGCATCTATCGTTGCCACCAGTAAAGCTACATTGCAGTA 425 Query 394 TGCTTGCAGAAGACGCTATCAAGGCAGCGGTTAAAAACTACAAGCAGAAGCAAGCCGAGG 453 |||||||||||||||||||||||||||| |||||||||||||| ||||||||| | ||| Sbjct 426 TGCTTGCAGAAGACGCTATCAAGGCAGCAATTAAAAACTACAAGGAGAAGCAAGACAAGG 485 Query 454 CTAATAGTGAAACCGTCGAGGCC-T-GATTCCACTCATTTACAAGGTATT 501 ||||| | |||||||| || || | ||||||||| ||||||| |||||| Sbjct 486 CTAATGGCGAAACCGTTGAAACCATCGATTCCACTTATTTACACGGTATT 535 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23911453972 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5