BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943201 Length=1849 Score E Sequences producing significant alignments: (Bits) Value AT4G04180.1 | Symbols: | P-loop containing nucleoside triphosp... 2531 0.0 > AT4G04180.1 | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:2020436-2023992 FORWARD LENGTH=2184 Length=2184 Score = 2531 bits (1370), Expect = 0.0 Identities = 1574/1669 (94%), Gaps = 28/1669 (2%) Strand=Plus/Plus Query 1 AATTGTGTAAAACTACTCCAATGGCGGTTCTGGACAAATTGTTTCGAGCATCTCGAGCAT 60 ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 16 AATTGTGTAAAACCACTCCAATGGCGATTCTGGACAAATTGTTTCGAGCATCTCGAGCAT 75 Query 61 GGCGCGGATCACTCTCTCATTCTAAATCCATGGCTCCATCGC-A--ACCACGGGCACGAG 117 ||||||||||||||||||||||||||||||||| ||| |||| | |||||||||||||| Sbjct 76 GGCGCGGATCACTCTCTCATTCTAAATCCATGGTTCCTTCGCAATCACCACGGGCACGAG 135 Query 118 AGCTTCGTCGCTGTTTCTA-TAGCGGAACCTTTGATCAGAGCAATTCAAAAGTAAATCAA 176 ||||||||||||||||| | | ||||| |||||| ||||| |||||||||||||||||| Sbjct 136 AGCTTCGTCGCTGTTTCCACCA-CGGAAACTTTGAGCAGAGTAATTCAAAAGTAAATCAA 194 Query 177 GTATTGAGATCTTGCAGCACCATAAACGATTCTCCATACTTTTCCATAGCACCTGCAGTT 236 || |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| Sbjct 195 GTCTTGAGATCTTGCAGCACCCTAAACGATTCTCCATACTTTTCCATGGCACCTGCAGTT 254 Query 237 TTGGGTGCTCTCTTCAGTGTTGGAGCT-ATAGGAGTAGCTTATGCTGAATCTGATGAGGt 295 |||||||||||||| || ||||||| | || |||||||||||||||||||||||||||| Sbjct 255 TTGGGTGCTCTCTTTAGCGTTGGAG-TAATTGGAGTAGCTTATGCTGAATCTGATGAGG- 312 Query 296 tttttttACTGATTCTAGTTTAAAACTTACCTTCTTGAA-GGCTACTAATGAC--AA-GT 351 | || ||| | || | ||| || | || | | |||||||| || || Sbjct 313 --CTAATAATGA--CAAG--T----CTT--CTGCCCCAATAGATCCTAATGACGAAACGT 360 Query 352 CATCTGCCCCAATAGATCCTCCACCAAACTATGTAGACATTGCCAAGAAAGAACGAGCTC 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 CATCTGCCCCAATAGATCCTCCACCAAACTATGTAGACATTGCCAAGAAAGAACGAGCTC 420 Query 412 GAATTGAAGAACTGATATC-AAGTAAAGGAACTCAATATGGTTCTTACCCACGGTTCAAT 470 || |||||||||| ||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 421 GAGTTGAAGAACTTATA-CAAAGTAAAGGAACTCAATATGGTTCTTACCCACGGTTCAAT 479 Query 471 GTTGCTGTCAGGGGTCAAAAGATTACCTTGAAGTTCCAAGTTGCTTCTACTTGTGAAGTC 530 |||||||| || |||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 480 GTTGCTGTAAGAGGTCAAAAGATTACGTTGAAGTTCCAAGTTCCTTCTACTTGTGAAGTC 539 Query 531 GCACAGTTGATATCAAACATTGGATCCCAACTAGGTGTGAAAGTCTCAGATCGCACTGGT 590 ||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 540 GCACAATTAATATCAAACATTGGATCCCAACTAGGTGTGAAAGTCTCAGATCGTACTGGT 599 Query 591 GGTTCTGATATGCTATTGCGTGCTTGGGACAATCCAGTCGCTTGGCAAATAACACTTCGC 650 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 GGTTCAGATATGCTATTGCGTGCTTGGGACAATCCAGTCGCTTGGCAAATAACACTTCGC 659 Query 651 AGTGTGGAAAACAAGAAGAAACTAGGAGAGAGTGAAGATGATTCAGATGATGACTTGTGC 710 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 660 AGTGTGGAAAACAAGAAGAAACTTGGAGAGAGTGAAGATGATTCAGATGATGACTTGTGC 719 Query 711 ATTCTTATCTTCGGTTCCTTACTTACCTCGGATAAAGTGGAAGTTGAGTTTATAAAGAAG 770 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 ATTCTTATCTTTGGTTCCTTACTTACCTCGGATAAAGTGGAAGTTGAGTTTATAAAGAAG 779 Query 771 GGAAGTTTGACCACTGAAGAACTTGAGGCTTTTGTTTCAGCTTTGCGAGTAGCTGGAACA 830 ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 780 GGAAGTTTGACTACTGAAGAACTTGAGGCTTTTGTTTCAGCTTTGGGAGTAGCTGGAACA 839 Query 831 AAAGCTGGACAAAATAAGGGAGGTGG-AGTTAGAGGTAGCGCTCGTGAATCGTCTACCGA 889 ||||||||||||||||||||| | || || |||||| ||| ||||||| |||||||| || Sbjct 840 AAAGCTGGACAAAATAAGGGAAGCGGCAG-TAGAGGAAGCACTCGTGATTCGTCTACAGA 898 Query 890 AAAATCTATCTCTCAATTGGAGTCTATGGGAGTGAGAATCTTTGGAGTTAATAAACCTCT 949 ||||||||||| || ||||||||||||||||| ||||||| |||||||||||||||||| Sbjct 899 CAAATCTATCTCCCAGTTGGAGTCTATGGGAGTCAGAATCTATGGAGTTAATAAACCTCT 958 Query 950 TGGGGATGATTCTGTGGATGAGATATCATGGGACAATATTGCTGGATATGATCAGCAAAA 1009 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 TGGGGATGATTCTATGGATGAGATATCATGGGACAATATTGCTGGATATGATCAGCAAAA 1018 Query 1010 GCGAGAGATAGAAGATACAATATTGATGGCCCTTCATAGTCCTGAAGTGTATGATGATAT 1069 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1019 GCGAGAGATAGAAGATACAATATTGATGGCTCTTCATAGTCCTGAAGTGTATGATGATAT 1078 Query 1070 AGTACGTGGTACACGGTCCAAATTTGAATCAAACAGACCTCGGGCTGTTCTATTTGAGGG 1129 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1079 TGTACGTGGTACACGGTCCAAATTTGAATCCAACAGACCTCGGGCTGTTCTATTTGAGGG 1138 Query 1130 TCCACCAGGAACTGGGAAGACATCTTGTGCGCGTGTTATTGCTAATCAGGCGGGCATACC 1189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1139 TCCACCAGGAACTGGGAAGACATCTTGTGCGCGTGTTATTGCTAATCAGGCGGGCATACC 1198 Query 1190 GTTGTTGTATGTGCCGCTTGAAGCTGTAATGTCTAAGTACTATGGTGAAAGCGAGCGGCT 1249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1199 ATTGTTGTATGTGCCGCTTGAAGCTGTAATGTCTAAGTACTATGGTGAAAGCGAGCGTCT 1258 Query 1250 TCTTGGGGATGTGTTTTCTCAAGCAAATGAGCTCCCTAATGGTGCGATTATATTTCTTGA 1309 |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1259 TCTTGGGGCTGTGTTTTCTCAAGCAAATGAGCTCCCTGATGGTGCGATTATATTTCTTGA 1318 Query 1310 TGAGATTGATGCATTTGCTATCTCTCGTGATAGTGAGATGCATGAAGCAACGCGTAGAGT 1369 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1319 TGAGATTGATGCATTTGCTATCTCTCGTGATAGTGAGATGCATGAAGCAACGCGTAGAGT 1378 Query 1370 TTTGTCGGTACTACTAAGGCAGATTGATGGATTTGAACAAGACAAAAAAGTGGTTGTGAT 1429 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1379 TTTGTCGGTACTACTAAGGCAGATTGATGGATTTGAACAAGAAAAAAAAGTGGTTGTGAT 1438 Query 1430 TGCTGCAACCAATAGAAAACAAGATCTTGATCCCGCTTTGATCAGCCGGTTCGATTCCAT 1489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1439 TGCTGCAACCAATAGAAAACAAGATCTTGATCCCGCTTTGATCAGCCGGTTCGATTCCAT 1498 Query 1490 GATCATGTTTGACTTACCGGACTTACAAACTCGTCAAGAAATCATCGCCCAATATGCAAA 1549 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| Sbjct 1499 GATCATGTTTGACTTACCGGATTTACAAACTCGTCAAGAAATCATCGCTCAATACGCAAA 1558 Query 1550 GCAACTCTCAAAGCCTGAACTAGTCCAGCTTGCTCAGGCCACAGAAGCAATGTCAGGCAG 1609 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1559 ACAACTCTCAAAGCCTGAACTAGTCCAGCTTGCTCAAGCCACAGAAGCAATGTCAGGCAG 1618 Query 1610 GGATATTCGAGATGTATGTCAAGGAGCAGAACGAACATGGGCTTCAAAG 1658 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1619 AGATATTCGAGATGTATGTCAAGGAGCAGAACGAACATGGGCTTCAAAG 1667 Score = 244 bits (132), Expect = 2e-63 Identities = 162/177 (92%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 1657 AGTTGATTCGTCGAGCAAAAGCGGGTGGAGAAGAACGAAAGATCACTCTCCCTCCAATAC 1716 |||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||| Sbjct 1693 AGTTGATTCGTCGAGCAAAAGCCGGTGGAGAAGAACAAAAGATCACTCTTCCTCCAATAC 1752 Query 1717 AAGAGTACTTGGAAAGCGCTGAGGCTCGGCGCAAAGCTCTTCTTAGTGTAACAGAGCAGA 1776 |||||||||||||||||||||| |||||||||||| |||||| |||||| || ||||||| Sbjct 1753 AAGAGTACTTGGAAAGCGCTGAAGCTCGGCGCAAATCTCTTCGTAGTGTCACGGAGCAGA 1812 Query 1777 AAGAACCGAAATTCGCTGCTCGTTCCAAGAAACCTCTACTAGATTTTGAGTGATAAT 1833 | |||| |||||| |||||||| |||||||||||||| || |||||||||||| ||| Sbjct 1813 AGGAACAGAAATTTGCTGCTCGCTCCAAGAAACCTCTGCTTGATTTTGAGTGACAAT 1869 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 91515593535 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5