BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943201
Length=1849
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04180.1 | Symbols: | P-loop containing nucleoside triphosp... 2531 0.0
> AT4G04180.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:2020436-2023992
FORWARD LENGTH=2184
Length=2184
Score = 2531 bits (1370), Expect = 0.0
Identities = 1574/1669 (94%), Gaps = 28/1669 (2%)
Strand=Plus/Plus
Query 1 AATTGTGTAAAACTACTCCAATGGCGGTTCTGGACAAATTGTTTCGAGCATCTCGAGCAT 60
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 16 AATTGTGTAAAACCACTCCAATGGCGATTCTGGACAAATTGTTTCGAGCATCTCGAGCAT 75
Query 61 GGCGCGGATCACTCTCTCATTCTAAATCCATGGCTCCATCGC-A--ACCACGGGCACGAG 117
||||||||||||||||||||||||||||||||| ||| |||| | ||||||||||||||
Sbjct 76 GGCGCGGATCACTCTCTCATTCTAAATCCATGGTTCCTTCGCAATCACCACGGGCACGAG 135
Query 118 AGCTTCGTCGCTGTTTCTA-TAGCGGAACCTTTGATCAGAGCAATTCAAAAGTAAATCAA 176
||||||||||||||||| | | ||||| |||||| ||||| ||||||||||||||||||
Sbjct 136 AGCTTCGTCGCTGTTTCCACCA-CGGAAACTTTGAGCAGAGTAATTCAAAAGTAAATCAA 194
Query 177 GTATTGAGATCTTGCAGCACCATAAACGATTCTCCATACTTTTCCATAGCACCTGCAGTT 236
|| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 195 GTCTTGAGATCTTGCAGCACCCTAAACGATTCTCCATACTTTTCCATGGCACCTGCAGTT 254
Query 237 TTGGGTGCTCTCTTCAGTGTTGGAGCT-ATAGGAGTAGCTTATGCTGAATCTGATGAGGt 295
|||||||||||||| || ||||||| | || ||||||||||||||||||||||||||||
Sbjct 255 TTGGGTGCTCTCTTTAGCGTTGGAG-TAATTGGAGTAGCTTATGCTGAATCTGATGAGG- 312
Query 296 tttttttACTGATTCTAGTTTAAAACTTACCTTCTTGAA-GGCTACTAATGAC--AA-GT 351
| || ||| | || | ||| || | || | | |||||||| || ||
Sbjct 313 --CTAATAATGA--CAAG--T----CTT--CTGCCCCAATAGATCCTAATGACGAAACGT 360
Query 352 CATCTGCCCCAATAGATCCTCCACCAAACTATGTAGACATTGCCAAGAAAGAACGAGCTC 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CATCTGCCCCAATAGATCCTCCACCAAACTATGTAGACATTGCCAAGAAAGAACGAGCTC 420
Query 412 GAATTGAAGAACTGATATC-AAGTAAAGGAACTCAATATGGTTCTTACCCACGGTTCAAT 470
|| |||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAGTTGAAGAACTTATA-CAAAGTAAAGGAACTCAATATGGTTCTTACCCACGGTTCAAT 479
Query 471 GTTGCTGTCAGGGGTCAAAAGATTACCTTGAAGTTCCAAGTTGCTTCTACTTGTGAAGTC 530
|||||||| || |||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 480 GTTGCTGTAAGAGGTCAAAAGATTACGTTGAAGTTCCAAGTTCCTTCTACTTGTGAAGTC 539
Query 531 GCACAGTTGATATCAAACATTGGATCCCAACTAGGTGTGAAAGTCTCAGATCGCACTGGT 590
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 540 GCACAATTAATATCAAACATTGGATCCCAACTAGGTGTGAAAGTCTCAGATCGTACTGGT 599
Query 591 GGTTCTGATATGCTATTGCGTGCTTGGGACAATCCAGTCGCTTGGCAAATAACACTTCGC 650
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GGTTCAGATATGCTATTGCGTGCTTGGGACAATCCAGTCGCTTGGCAAATAACACTTCGC 659
Query 651 AGTGTGGAAAACAAGAAGAAACTAGGAGAGAGTGAAGATGATTCAGATGATGACTTGTGC 710
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 660 AGTGTGGAAAACAAGAAGAAACTTGGAGAGAGTGAAGATGATTCAGATGATGACTTGTGC 719
Query 711 ATTCTTATCTTCGGTTCCTTACTTACCTCGGATAAAGTGGAAGTTGAGTTTATAAAGAAG 770
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATTCTTATCTTTGGTTCCTTACTTACCTCGGATAAAGTGGAAGTTGAGTTTATAAAGAAG 779
Query 771 GGAAGTTTGACCACTGAAGAACTTGAGGCTTTTGTTTCAGCTTTGCGAGTAGCTGGAACA 830
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 780 GGAAGTTTGACTACTGAAGAACTTGAGGCTTTTGTTTCAGCTTTGGGAGTAGCTGGAACA 839
Query 831 AAAGCTGGACAAAATAAGGGAGGTGG-AGTTAGAGGTAGCGCTCGTGAATCGTCTACCGA 889
||||||||||||||||||||| | || || |||||| ||| ||||||| |||||||| ||
Sbjct 840 AAAGCTGGACAAAATAAGGGAAGCGGCAG-TAGAGGAAGCACTCGTGATTCGTCTACAGA 898
Query 890 AAAATCTATCTCTCAATTGGAGTCTATGGGAGTGAGAATCTTTGGAGTTAATAAACCTCT 949
||||||||||| || ||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 899 CAAATCTATCTCCCAGTTGGAGTCTATGGGAGTCAGAATCTATGGAGTTAATAAACCTCT 958
Query 950 TGGGGATGATTCTGTGGATGAGATATCATGGGACAATATTGCTGGATATGATCAGCAAAA 1009
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TGGGGATGATTCTATGGATGAGATATCATGGGACAATATTGCTGGATATGATCAGCAAAA 1018
Query 1010 GCGAGAGATAGAAGATACAATATTGATGGCCCTTCATAGTCCTGAAGTGTATGATGATAT 1069
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1019 GCGAGAGATAGAAGATACAATATTGATGGCTCTTCATAGTCCTGAAGTGTATGATGATAT 1078
Query 1070 AGTACGTGGTACACGGTCCAAATTTGAATCAAACAGACCTCGGGCTGTTCTATTTGAGGG 1129
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1079 TGTACGTGGTACACGGTCCAAATTTGAATCCAACAGACCTCGGGCTGTTCTATTTGAGGG 1138
Query 1130 TCCACCAGGAACTGGGAAGACATCTTGTGCGCGTGTTATTGCTAATCAGGCGGGCATACC 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TCCACCAGGAACTGGGAAGACATCTTGTGCGCGTGTTATTGCTAATCAGGCGGGCATACC 1198
Query 1190 GTTGTTGTATGTGCCGCTTGAAGCTGTAATGTCTAAGTACTATGGTGAAAGCGAGCGGCT 1249
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1199 ATTGTTGTATGTGCCGCTTGAAGCTGTAATGTCTAAGTACTATGGTGAAAGCGAGCGTCT 1258
Query 1250 TCTTGGGGATGTGTTTTCTCAAGCAAATGAGCTCCCTAATGGTGCGATTATATTTCTTGA 1309
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1259 TCTTGGGGCTGTGTTTTCTCAAGCAAATGAGCTCCCTGATGGTGCGATTATATTTCTTGA 1318
Query 1310 TGAGATTGATGCATTTGCTATCTCTCGTGATAGTGAGATGCATGAAGCAACGCGTAGAGT 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TGAGATTGATGCATTTGCTATCTCTCGTGATAGTGAGATGCATGAAGCAACGCGTAGAGT 1378
Query 1370 TTTGTCGGTACTACTAAGGCAGATTGATGGATTTGAACAAGACAAAAAAGTGGTTGTGAT 1429
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1379 TTTGTCGGTACTACTAAGGCAGATTGATGGATTTGAACAAGAAAAAAAAGTGGTTGTGAT 1438
Query 1430 TGCTGCAACCAATAGAAAACAAGATCTTGATCCCGCTTTGATCAGCCGGTTCGATTCCAT 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TGCTGCAACCAATAGAAAACAAGATCTTGATCCCGCTTTGATCAGCCGGTTCGATTCCAT 1498
Query 1490 GATCATGTTTGACTTACCGGACTTACAAACTCGTCAAGAAATCATCGCCCAATATGCAAA 1549
||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 1499 GATCATGTTTGACTTACCGGATTTACAAACTCGTCAAGAAATCATCGCTCAATACGCAAA 1558
Query 1550 GCAACTCTCAAAGCCTGAACTAGTCCAGCTTGCTCAGGCCACAGAAGCAATGTCAGGCAG 1609
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1559 ACAACTCTCAAAGCCTGAACTAGTCCAGCTTGCTCAAGCCACAGAAGCAATGTCAGGCAG 1618
Query 1610 GGATATTCGAGATGTATGTCAAGGAGCAGAACGAACATGGGCTTCAAAG 1658
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 AGATATTCGAGATGTATGTCAAGGAGCAGAACGAACATGGGCTTCAAAG 1667
Score = 244 bits (132), Expect = 2e-63
Identities = 162/177 (92%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 1657 AGTTGATTCGTCGAGCAAAAGCGGGTGGAGAAGAACGAAAGATCACTCTCCCTCCAATAC 1716
|||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||
Sbjct 1693 AGTTGATTCGTCGAGCAAAAGCCGGTGGAGAAGAACAAAAGATCACTCTTCCTCCAATAC 1752
Query 1717 AAGAGTACTTGGAAAGCGCTGAGGCTCGGCGCAAAGCTCTTCTTAGTGTAACAGAGCAGA 1776
|||||||||||||||||||||| |||||||||||| |||||| |||||| || |||||||
Sbjct 1753 AAGAGTACTTGGAAAGCGCTGAAGCTCGGCGCAAATCTCTTCGTAGTGTCACGGAGCAGA 1812
Query 1777 AAGAACCGAAATTCGCTGCTCGTTCCAAGAAACCTCTACTAGATTTTGAGTGATAAT 1833
| |||| |||||| |||||||| |||||||||||||| || |||||||||||| |||
Sbjct 1813 AGGAACAGAAATTTGCTGCTCGCTCCAAGAAACCTCTGCTTGATTTTGAGTGACAAT 1869
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91515593535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5