BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943213
Length=289
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04360.1 | Symbols: | Protein of unknown function (DUF1068)... 322 1e-87
> AT4G04360.1 | Symbols: | Protein of unknown function (DUF1068)
| chr4:2133139-2133935 REVERSE LENGTH=603
Length=603
Score = 322 bits (174), Expect = 1e-87
Identities = 197/208 (95%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 1 AGAAAGTAATAAAGAGAGAGATGACCAGAAGGCAGAAGAAGACGGCGAAGGTGGTAACAG 60
|||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 52 AGAAAG-AA-ATAGAGAGAGATGACCAGAAGGCAGAAGAAGACGGCGAAGGTGGTAACAG 109
Query 61 TGGTAATGGGATTGTGTATTGTCGCCTACATTGCAGGACCGTCTCTGTATTGGCATCTCA 120
||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 110 TGGTAATGGGACTGTGTATTGTCGCATATATTGCAGGACCGTCTCTGTATTGGCATCTCA 169
Query 121 ACGAGACCATTGCAGATTCTCTCCACTCCTCTTGCCCACCTTGTGTATGTGACTGTTCTT 180
| |||||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 170 ATGAGACCATTGCAGATTCTCTCCACTCCTCTTGTCCTCCTTGTGTATGTGATTGTTCTT 229
Query 181 CTCAGCCTCTCCTCTCCATCCCCGACGG 208
||||||||||||||||||| ||||||||
Sbjct 230 CTCAGCCTCTCCTCTCCATTCCCGACGG 257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13320953485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5